Co-expression analysis

Gene ID	PsAffx.C63000067_at
Gene name
Homology with Arabidopsis	Similar to At5g05150: AtATG18e (HF=1e-1)
Module size	6 genes
NF	0.75
%ile	97.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.85	PsAffx.C63000067_at	PsAffx.C63000067	-	-	1e-1	At5g05150	AtATG18e	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.86	HgAffx.11003.1.S1_at	CB824101	-	-	4e+0	At3g28630	-	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.88	HgAffx.5776.1.S1_at	CB826435	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.86	PsAffx.C6000193_at	PsAffx.C6000193	-	-	1e+1	Atmg00450	-	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.85	HgAffx.24315.1.S1_at	CB374815	-	-	9e-1	At4g15930	microtubule motor	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.85	PsAffx.C47000085_at	PsAffx.C47000085	-	-	2e+0	At1g04350	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
46.6	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.69216.1.S1_a_at, orthologous to the query gene, PsAffx.C63000067_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	95.3	PtpAffx.69216.1.S1_a_at	At5g05150	hypothetical protein	-	8e-1	At3g24020	disease resistance-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.388.1.S1_s_at	At5g05150	hypothetical protein	-	3e-21	At4g26850	VTC2 (vitamin c defective 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.56970.1.A1_at	At5g05150	-	-	2e-9	At5g65460	kinesin motor protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	Ptp.6137.1.S1_s_at	At5g05150	hypothetical protein	-	1e-45	At5g09890	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.47750.1.A1_at	At5g05150	hypothetical protein	-	2e-24	At2g47490	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.3518.1.S1_at	At5g05150	hypothetical protein	-	1e-7	At2g29900	presenilin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.98487.1.S1_s_at	At5g05150	glycosyltransferase, CAZy family GT8	-	2e-12	At5g47780	GAUT4 (Galacturonosyltransferase 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.2593.1.S1_s_at	At5g05150	hypothetical protein	-	1e-7	At5g60750	CAAX amino terminal protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	Ptp.1670.1.S1_at	At5g05150	hypothetical protein	-	8e-31	At1g29470	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	Ptp.7517.1.A1_at	At5g05150	hypothetical protein	-	2e-9	At5g50250	31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.99352.1.S1_at	At5g05150	hypothetical protein	-	1e-8	At5g52060	ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.1771.1.A1_s_at	At5g05150	hypothetical protein	-	2e-6	At2g03280	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.12764.2.S1_a_at	At5g05150	hypothetical protein	-	2e-3	At2g28060	protein kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.208772.1.S1_at	At5g05150	hypothetical protein	-	4e-92	At2g32040	integral membrane transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.212060.1.S1_at	At5g05150	hypothetical protein	-	3e-50	At4g03200	catalytic	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.207376.1.S1_at	At5g05150	hypothetical protein	-	4e-4	At3g50920	phosphatidic acid phosphatase-related / PAP2-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.42674.1.A1_a_at	At5g05150	actin depolymerizing factor 4	-	3e-23	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.6726.1.S1_s_at	At5g05150	hypothetical protein	-	4e-27	At3g55360	CER10	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.1027.1.A1_at	At5g05150	hypothetical protein	-	6e-16	At1g63010	SPX (SYG1/Pho81/XPR1) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	Ptp.935.1.A1_at	At5g05150	hypothetical protein	-	4e+0	At5g59400	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.249.417.A1_a_at	At5g05150	hypothetical protein	-	1e-10	At1g78380	ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	Ptp.4981.1.S1_at	At5g05150	hypothetical protein	-	8e-34	At3g24190	ABC1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.15749.1.S1_at	At5g05150	-	-	6e-7	At5g57050	ABI2 (ABA INSENSITIVE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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