Co-expression analysis

Gene ID PsAffx.C63000067_at
Gene name
Homology with ArabidopsisSimilar to At5g05150: AtATG18e (HF=1e-1)
Module size 6 genes
NF 0.75
%ile 97.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.85PsAffx.C63000067_atPsAffx.C63000067--1e-1At5g05150AtATG18eO.I.H.G.S.X.
0.8091.50.86HgAffx.11003.1.S1_atCB824101--4e+0At3g28630-O.I.H.G.S.X.
0.7388.90.88HgAffx.5776.1.S1_atCB826435--1e+0At5g59030COPT1 (copper transporter 1)O.I.H.G.S.X.
0.6786.10.86PsAffx.C6000193_atPsAffx.C6000193--1e+1Atmg00450-O.I.H.G.S.X.
0.6382.90.85HgAffx.24315.1.S1_atCB374815--9e-1At4g15930microtubule motorO.I.H.G.S.X.
0.5678.20.85PsAffx.C47000085_atPsAffx.C47000085--2e+0At1g043502-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.699.9GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.297.4GSM29426823_2428.2I.R297P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.796.8GSM29244849_C110.1G.V7G1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.696.7GSM29283818_C211.1L.SLL3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM29364168_2065.2B.R129U, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29308281_C019.1N.R9N1U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os05g0290300, orthologous to the query gene, PsAffx.C63000067_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6079.7Os05g0290300At5g05150-Hypothetical protein6e+0At4g17200F-box family proteinO.I.H.G.S.X.
0.8696.4Os03g0747600At5g05150-GCN5-related N-acetyltransferase domain containingprotein2e-12At5g36670PHD finger family proteinO.I.H.G.S.X.
0.6787.2Os01g0612000At5g05150-DNA methyltransferase PMT1-like protein6e-5At5g25480DNMT2 (DNA METHYLTRANSFERASE-2)O.I.H.G.S.X.
0.5777.0Os10g0489100At5g05150-Protein arginine N-methyltransferase-like protein2e-7At3g20020PRMT6 (PROTEIN ARGININE METHYLTRANSFERASE 6)O.I.H.G.S.X.
0.4762.3Os10g0363100At5g05150-Glycosyltransferase QUASIMODO1 (EC 2.4.1.-)3e-20At4g38270GAUT3 (Galacturonosyltransferase 3)O.I.H.G.S.X.
0.4660.9Os04g0544900At5g05150-Alg9-like mannosyltransferase family protein2e-26At1g02145transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.4355.4Os05g0299300At5g05150-WD40-like domain containing protein4e-1At1g13950ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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