Co-expression analysis

Gene ID	PsAffx.C61000064_at
Gene name
Homology with Arabidopsis	Similar to At1g14590: - (HF=9e-1)
Module size	36 genes
NF	0.57
%ile	88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.8	0.91	PsAffx.C61000064_at	PsAffx.C61000064	-	-	9e-1	At1g14590	-	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.97	GmaAffx.64860.1.S1_s_at	BM954536	-	-	3e+0	At5g24860	FPF1 (FLOWERING PROMOTING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.70	87.1	0.92	PsAffx.psHB007xK10f_at	PsAffx.psHB007xK10f	-	-	5e+0	At5g02420	unknown protein	O.I.	H.G.	S.X.	Please select
0.68	86.4	0.96	PsAffx.CL198Contig1_at	PsAffx.CL198Contig1	-	-	7e+0	At5g19230	unknown protein	O.I.	H.G.	S.X.	Please select
0.68	86.4	0.96	PsAffx.CL102Contig1_at	PsAffx.CL102Contig1	-	-	2e-1	At1g72080	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.94	PsAffx.CL391Contig1_at	PsAffx.CL391Contig1	-	-	5e-1	At2g31370	bZIP transcription factor (POSF21)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.96	GmaAffx.58235.1.S1_at	BE583725	-	-	1e+1	At2g15760	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.96	GmaAffx.44544.1.S1_s_at	BE583950	-	-	3e-3	At5g51820	PGM (PHOSPHOGLUCOMUTASE)	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.97	PsAffx.CL52Contig1_at	PsAffx.CL52Contig1	-	-	8e-10	At2g36530	LOS2	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.96	PsAffx.CL88Contig1_at	PsAffx.CL88Contig1	-	-	5e-1	At4g14225	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.62	82.1	0.97	GmaAffx.58228.1.S1_s_at	BE583515	-	-	2e-1	At1g07860	unknown protein	O.I.	H.G.	S.X.	Please select
0.62	82.1	0.97	PsAffx.CL6Contig4_at	PsAffx.CL6Contig4	-	-	7e-5	At3g21720	ICL (ISOCITRATE LYASE)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.97	PsAffx.CL94Contig1_at	PsAffx.CL94Contig1	-	-	5e+0	At2g31090	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.97	PsAffx.psHB039xF23f_s_at	PsAffx.psHB039xF23f	-	-	1e-1	At1g22520	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.95	PsAffx.CL1429Contig1_s_at	PsAffx.CL1429Contig1	-	-	1e+0	At5g28950	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.96	PsAffx.C11000062_at	PsAffx.C11000062	-	-	1e+0	At2g39800	P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.97	PsAffx.CL148Contig1_at	PsAffx.CL148Contig1	-	-	6e-1	At5g60850	OBP4	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.97	PsAffx.CL381Contig1_at	PsAffx.CL381Contig1	-	-	9e-1	At2g43400	ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.95	PsAffx.C120000030_s_at	PsAffx.C120000030	-	-	5e+0	At1g43780	scpl44 (serine carboxypeptidase-like 44)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.94	PsAffx.C203000005_at	PsAffx.C203000005	-	-	2e-1	At3g09032	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.96	PsAffx.CL1241Contig1_at	PsAffx.CL1241Contig1	-	-	1e+1	At2g36210	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.97	PsAffx.CL315Contig1_at	PsAffx.CL315Contig1	-	-	8e-1	At2g13290	glycosyl transferase family 17 protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.96	PsAffx.C151000013_s_at	PsAffx.C151000013	-	-	5e-3	At2g33730	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.95	PsAffx.C57000084_s_at	PsAffx.C57000084	-	-	2e+0	At2g29950	ELF4-L1 (ELF4-Like 1)	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.93	PsAffx.psML003xD19f_s_at	PsAffx.psML003xD19f	-	-	9e+0	At3g55050	serine/threonine protein phosphatase 2C (PP2C6)	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.97	PsAffx.psHB027xB22f_at	PsAffx.psHB027xB22f	-	-	4e+0	At5g39210	CRR7 (CHLORORESPIRATORY REDUCTION 7)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.96	PsAffx.CL324Contig1_at	PsAffx.CL324Contig1	-	-	2e+0	At4g30820	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.97	PsAffx.CL470Contig1_at	PsAffx.CL470Contig1	-	-	6e+0	At2g04480	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.96	PsAffx.CL301Contig1_at	PsAffx.CL301Contig1	-	-	2e+0	At1g77330	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.96	PsAffx.CL1119Contig1_at	PsAffx.CL1119Contig1	-	-	1e+0	At4g37830	cytochrome c oxidase-related	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.97	PsAffx.CL174Contig1_at	PsAffx.CL174Contig1	-	-	4e-7	At4g22220	ISU1	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.96	PsAffx.CL499Contig1_at	PsAffx.CL499Contig1	-	-	8e+0	At4g08190	Ras-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.97	PsAffx.C76000032_at	PsAffx.C76000032	-	-	5e-1	At5g64090	-	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.96	PsAffx.CL132Contig1_at	PsAffx.CL132Contig1	-	-	1e-2	At3g63080	ATGPX5 (glutathione peroxidase 5)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.97	PsAffx.C85000012_s_at	PsAffx.C85000012	-	-	9e-1	At1g07860	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.96	PsAffx.CL322Contig1_s_at	PsAffx.CL322Contig1	-	-	2e+1	At5g44578	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.4	99.6	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
13.5	99.5	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
12.6	99.5	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
11.6	99.4	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
11.4	99.4	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
11.0	99.4	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
10.5	99.3	GSM171725	9_Z.F.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
10.4	99.3	GSM171677	28_Z.E.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
9.9	99.3	GSM171606	12_V.I.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
9.6	99.2	GSM171646	21_V.E.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
9.4	99.2	GSM171664	25_Y.E.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
9.1	99.2	GSM171634	19_V.F.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.5	99.1	GSM171712	6_Y.L.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.4	99.1	GSM171599	10_W.I.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.1	99.0	GSM171685	2_Z.L.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.4	98.9	GSM171719	8_W.L.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.8	98.7	GSM171710	6_V.L.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.5	98.7	GSM171656	23_Y.E.M.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.1	98.5	GSM171676	28_Y.I.M.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.7	98.4	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.6	98.3	GSM171633	18_Y.F.M.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.6	98.3	GSM171671	27_W.E.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.5	98.3	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM171604	11_Y.L.M.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.4	98.2	GSM171641	1_Z.I.M.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.4	98.2	GSM171687	30_W.F.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.0	98.0	GSM171627	17_W.L.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.6	97.7	GSM171631	18_V.I.M.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.5	97.7	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM171721	8_Z.E.M.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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