Co-expression analysis

Gene ID	PsAffx.C608000003_at
Gene name
Homology with Arabidopsis	Similar to At1g31070: UDP-N-acetylglucosamine pyrophosphorylase-related (HF=5e+0)
Module size	6 genes
NF	0.43
%ile	73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.81	PsAffx.C608000003_at	PsAffx.C608000003	-	-	5e+0	At1g31070	UDP-N-acetylglucosamine pyrophosphorylase-related	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.93	PsAffx.C5000113_at	PsAffx.C5000113	-	-	2e-2	At1g80410	EMB2753 (EMBRYO DEFECTIVE 2753)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.93	PsAffx.CL2391Contig1_at	PsAffx.CL2391Contig1	-	-	1e+0	At4g22460	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.93	PsAffx.C84000055_at	PsAffx.C84000055	-	-	8e-1	At1g16230	syntaxin-related family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.93	PsAffx.psMA013xP16f_at	PsAffx.psMA013xP16f	-	-	3e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.93	PsAffx.CL1570Contig1_at	PsAffx.CL1570Contig1	-	-	5e-1	At3g24830	60S ribosomal protein L13A (RPL13aB)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	97.5	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
3.3	96.2	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM244920	5_VP9.I5L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.67649.1.A1_at, orthologous to the query gene, PsAffx.C608000003_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.67649.1.A1_at	At1g31070	hypothetical protein	-	5e+0	At5g23908	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.144824.1.S1_at	At1g31070	hypothetical protein	-	5e-2	At4g31000	calmodulin-binding protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.33775.1.S1_at	At1g31070	hypothetical protein	-	1e-24	At1g68020	ATTPS6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.64085.1.S1_at	At1g31070	hypothetical protein	-	1e-2	At1g28380	NSL1 (necrotic spotted lesions 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.249.692.A1_s_at	At1g31070	-	-	8e-1	At3g43700	ATBPM6 (BTB-POZ and MATH domain 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.22899.2.S1_at	At1g31070	-	-	6e+0	At5g49370	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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