CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PsAffx.C608000003_at

Gene name
Homology with Arabidopsis Similar to At1g31070: UDP-N-acetylglucosamine pyrophosphorylase-related (HF=5e+0)

Module size 6 genes

NF 0.43

%ile 73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.81 PsAffx.C608000003_at PsAffx.C608000003 - - 5e+0 At1g31070 UDP-N-acetylglucosamine pyrophosphorylase-related O.I. H.G. S.X.
0.67 86.1 0.93 PsAffx.C5000113_at PsAffx.C5000113 - - 2e-2 At1g80410 EMB2753 (EMBRYO DEFECTIVE 2753) O.I. H.G. S.X.
0.67 86.1 0.93 PsAffx.CL2391Contig1_at PsAffx.CL2391Contig1 - - 1e+0 At4g22460 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.31 42.2 0.93 PsAffx.C84000055_at PsAffx.C84000055 - - 8e-1 At1g16230 syntaxin-related family protein O.I. H.G. S.X.
0.27 35.7 0.93 PsAffx.psMA013xP16f_at PsAffx.psMA013xP16f - - 3e-1 At2g30560 glycine-rich protein O.I. H.G. S.X.
0.15 18.7 0.93 PsAffx.CL1570Contig1_at PsAffx.CL1570Contig1 - - 5e-1 At3g24830 60S ribosomal protein L13A (RPL13aB) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 97.5 GSM294303 54_3153.2I.R9I2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM171703 4_W.E.I.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
3.3 96.2 GSM293015 20_1089.1N.R055L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM244920 5_VP9.I5L2.CEL, Experimental replicate 2 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g31070, orthologous to the query gene, PsAffx.C608000003_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g31070 839993 UDP-N-acetylglucosamine pyrophosphorylase-related F:nucleotidyltransferase activity;P:peptidoglycan biosynthetic process, metabolic process, UDP-N-acetylgalactosamine biosynthetic process;C:plasma membrane;MBFPO O.I. H.G. S.X.
0.25 22.6 At2g01070 814637 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;MFPO O.I. H.G. S.X.
0.05 1.1 At2g02480 814777 STI (STICHEL) STICHEL mutant shows trichomes with fewer than normal branches. O.I. H.G. S.X.
0.04 0.9 At3g28430 822473 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOP O.I. H.G. S.X.
0.00 0.0 At4g31480 829275 coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative F:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system, COPI vesicle coat;MOFP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage