Co-expression analysis

Gene ID	PsAffx.C3000058_at
Gene name
Homology with Arabidopsis	Similar to At1g52500: ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) (HF=3e-1)
Module size	11 genes
NF	0.31
%ile	57.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	57.1	0.70	PsAffx.C3000058_at	PsAffx.C3000058	-	-	3e-1	At1g52500	ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.79	GmaAffx.60715.1.S1_x_at	BU089784	-	-	5e+0	At5g53400	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.84	HgAffx.3584.1.A1_s_at	CK349106	-	-	2e+0	At2g37110	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.78	HgAffx.3643.1.A1_at	CK349047	-	-	7e-1	At1g05070	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.77	HgAffx.13905.6.S1_s_at	CB378944	-	-	5e+0	At4g25550	protein binding	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.81	GmaAffx.60715.1.S1_at	BU089784	-	-	5e+0	At5g53400	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.79	HgAffx.3851.1.A1_at	CK348839	-	-	2e+1	At5g66005	Expressed protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.81	HgAffx.19033.4.S1_s_at	CK350593	-	-	6e-2	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.73	HgAffx.20910.1.S1_at	BI748843	-	-	8e-1	At1g55670	PSAG (PHOTOSYSTEM I SUBUNIT G)	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.74	PsAffx.psMC009xE23f_at	PsAffx.psMC009xE23f	-	-	1e+1	At5g03550	-	O.I.	H.G.	S.X.	Please select
0.08	11.0	0.71	PsAffx.psZS014xC15f_s_at	PsAffx.psZS014xC15f	-	-	1e+1	At3g03000	calmodulin, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	98.2	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM147947	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.2	98.1	GSM294428	83_2450.2J.R161P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM294427	82_2447.2J.R119L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM294423	79_2455.2J.R220L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM294380	3_2464.2J.R260P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM294416	72_2472.2J.R108P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM294425	80_3168.2J.R9J1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM294429	84_2437.2J.R091U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM294437	91_2465.2J.R186U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294436	90_2445.2J.R294U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM294426	81_3163.2J.SLJ1U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM294431	86_2456.2J.R220P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM294432	87_3176.2J.SLJ3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.0	97.2	GSM294421	77_2442.2J.R198P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM294403	60_2462.2J.R176P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM294369	2_2439.2J.R135L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM294352	14_2471.2J.R108L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM294430	85_2455.2J.R220U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM294433	88_3173.2J.SLJ2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM294351	13_2475.2J.R081U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM294349	11_2465.2J.R186L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM294375	35_2473.2J.R052L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM294397	55_2458.2J.R073P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM294489	54_3198.2K.R9K3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM294409	66_3169.2J.R9J2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM147956	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.7	96.8	GSM294420	76_2449.2J.R161U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM294422	78_2467.2J.R216U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage