CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PsAffx.C177000015_at

Gene name
Homology with Arabidopsis Similar to At4g25150: acid phosphatase, putative (HF=2e-1)

Module size 6 genes

NF 0.89

%ile 99.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.85 PsAffx.C177000015_at PsAffx.C177000015 - - 2e-1 At4g25150 acid phosphatase, putative O.I. H.G. S.X.
0.83 92.5 0.86 HgAffx.24315.1.S1_at CB374815 - - 9e-1 At4g15930 microtubule motor O.I. H.G. S.X.
0.83 92.5 0.87 PsAffx.C47000085_at PsAffx.C47000085 - - 2e+0 At1g04350 2-oxoglutarate-dependent dioxygenase, putative O.I. H.G. S.X.
0.80 91.5 0.87 PsAffx.C154000024_at PsAffx.C154000024 - - 2e-1 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) O.I. H.G. S.X.
0.77 90.3 0.85 HgAffx.11003.1.S1_at CB824101 - - 4e+0 At3g28630 - O.I. H.G. S.X.
0.77 90.3 0.87 HgAffx.5776.1.S1_at CB826435 - - 1e+0 At5g59030 COPT1 (copper transporter 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
48.9 99.9 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7 96.8 GSM294268 23_2428.2I.R297P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5 96.6 GSM292448 49_C110.1G.V7G1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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