Co-expression analysis

Gene ID PsAffx.C15000112_at
Gene name
Homology with ArabidopsisSimilar to At4g09650: ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE) (HF=3e+0)
Module size 22 genes
NF 0.38
%ile 66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6886.40.80PsAffx.C15000112_atPsAffx.C15000112--3e+0At4g09650ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE)O.I.H.G.S.X.
0.5071.70.87PsAffx.C269000011_atPsAffx.C269000011--9e-2At4g32780phosphoinositide bindingO.I.H.G.S.X.
0.4563.90.90PsAffx.CL982Contig1_atPsAffx.CL982Contig1--2e+1At5g06240emb2735 (embryo defective 2735)O.I.H.G.S.X.
0.4563.90.90PsAffx.CL720Contig1_atPsAffx.CL720Contig1--8e+0At3g43574unknown proteinO.I.H.G.S.X.
0.4563.90.90PsAffx.C29000088_s_atPsAffx.C29000088--7e-1At4g16610zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.4360.60.92PsAffx.CL2324Contig1_atPsAffx.CL2324Contig1--9e-1At5g51650unknown proteinO.I.H.G.S.X.
0.4259.30.90PsAffx.C112000050_s_atPsAffx.C112000050--2e-1At5g54250ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)O.I.H.G.S.X.
0.3853.30.88PsAffx.C117000036_atPsAffx.C117000036--2e+0At2g33620DNA-binding family protein / AT-hook protein 1 (AHP1)O.I.H.G.S.X.
0.3853.30.91PsAffx.C110000043_atPsAffx.C110000043--1e+1At5g37740C2 domain-containing proteinO.I.H.G.S.X.
0.3853.30.92PsAffx.C67000061_s_atPsAffx.C67000061--8e-1At5g52200unknown proteinO.I.H.G.S.X.
0.3751.70.91PsAffx.C114000056_atPsAffx.C114000056--8e-4At3g06400CHR11 (CHROMATIN-REMODELING PROTEIN 11)O.I.H.G.S.X.
0.3650.80.91PsAffx.CL2001Contig1_atPsAffx.CL2001Contig1--4e+0At1g25250AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16)O.I.H.G.S.X.
0.3346.10.91GmaAffx.35370.1.S1_s_atBE583805--1e+1At5g47455unknown proteinO.I.H.G.S.X.
0.3346.10.91PsAffx.C146000020_atPsAffx.C146000020--1e-2At4g39870-O.I.H.G.S.X.
0.3142.20.94PsAffx.C103000011_atPsAffx.C103000011--4e+0At5g63905unknown proteinO.I.H.G.S.X.
0.3040.40.91PsAffx.CL860Contig1_atPsAffx.CL860Contig1--8e-2At2g4051040S ribosomal protein S26 (RPS26A)O.I.H.G.S.X.
0.2939.00.92PsAffx.CL730Contig1_atPsAffx.CL730Contig1--4e+0At5g37260RVE2 (REVEILLE 2)O.I.H.G.S.X.
0.2839.00.89PsAffx.psHB019xF23f_s_atPsAffx.psHB019xF23f--4e+0At5g04750F1F0-ATPase inhibitor protein, putativeO.I.H.G.S.X.
0.2430.90.89PsAffx.C246000022_atPsAffx.C246000022--5e-2At3g09700DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.2430.90.90PsAffx.C290000001_atPsAffx.C290000001--9e-4At4g16640matrix metalloproteinase, putativeO.I.H.G.S.X.
0.2430.90.88PsAffx.C1517000001_atPsAffx.C1517000001--2e+0At2g30766unknown proteinO.I.H.G.S.X.
0.2025.10.91PsAffx.C45000041_atPsAffx.C45000041--6e+0At3g48140senescence-associated protein, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.899.0GSM29430354_3153.2I.R9I2L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
6.798.7GSM1717034_W.E.I.5, Experimental replicate WGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistanceLink to GEO
5.798.4GSM29311328_C047.1O.R9O2L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
5.598.3GSM2940924_3111.2G.R9G1L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
5.298.1GSM29301520_1089.1N.R055L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.897.9GSM29322615_C065.1P.R9P2L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.797.8GSM29415116_3139.2H.R9H3L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.697.7GSM24489036_SLO.I2W2.CEL, Experimental replicate 2GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistanceLink to GEO
4.597.7GSM1717208_Y.E.I.5, Experimental replicate YGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistanceLink to GEO
4.497.6GSM29238459_C093.1F.R9F1L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.397.5GSM29375688_2113.2C.R285L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.397.5GSM2930807_C033.1N.R9N3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.397.5GSM17167528_W.I.M.5, Experimental replicate WGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistanceLink to GEO
4.297.4GSM17160812_Y.E.I.3, Experimental replicate YGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistanceLink to GEO
4.297.4GSM29307171_1055.1N.R032L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.297.4GSM29296644_C221.1M.R9M1L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.197.3GSM17161113_W.E.M.5, Experimental replicate WGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistanceLink to GEO
4.097.2GSM2924059_C101.1F.R9F2L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.997.1GSM29321393_C039.1O.SLO1L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.997.1GSM29426220_2405.2I.R084L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.997.1GSM29319476_1133.1O.R084L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.897.0GSM29329477_C067.1P.R9P3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.897.0GSM17166024_Y.I.M.5, Experimental replicate YGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistanceLink to GEO
3.796.8GSM24479113_SLO.I2W1.CEL, Experimental replicate 1GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistanceLink to GEO
3.796.8GSM2449205_VP9.I5L2.CEL, Experimental replicate 2GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistanceLink to GEO
3.796.8GSM29340890_C079.1Q.R9Q2L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.696.7GSM17161915_W.F.M.5, Experimental replicate WGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistanceLink to GEO
3.696.7GSM29324835_1155.1P.R097L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.596.6GSM29236435_C097.1F.SLF2L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.596.6GSM29415015_3131.2H.R9H1L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage