Co-expression analysis

Gene ID	PsAffx.C115000050_s_at
Gene name
Homology with Arabidopsis	Similar to At5g66490: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.84
%ile	98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.85	PsAffx.C115000050_s_at	PsAffx.C115000050	-	-	2e+0	At5g66490	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	92.5	0.88	HgAffx.5776.1.S1_at	CB826435	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.85	HgAffx.11003.1.S1_at	CB824101	-	-	4e+0	At3g28630	-	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.85	PsAffx.C154000024_at	PsAffx.C154000024	-	-	2e-1	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.85	HgAffx.24315.1.S1_at	CB374815	-	-	9e-1	At4g15930	microtubule motor	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.86	PsAffx.C6000193_at	PsAffx.C6000193	-	-	1e+1	Atmg00450	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
46.6	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the maize gene, Zm.1789.1.A1_at, orthologous to the query gene, PsAffx.C115000050_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	71.6	Zm.1789.1.A1_at	At5g66490	-	-	4e-1	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.7177.2.A1_x_at	At5g66490	hypothetical protein LOC100272913	-	4e-18	At3g52930	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.17646.1.S1_at	At5g66490	BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein	-	5e-3	At2g37585	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.8571.1.A1_at	At5g66490	hypothetical protein LOC100276153	-	1e-3	At4g18205	-	O.I.	H.G.	S.X.	Please select
0.21	15.5	ZmAffx.1000.1.A1_at	At5g66490	-	-	3e+0	At4g32290	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	4.0	Zm.15961.1.S1_x_at	At5g66490	-	-	4e-1	At3g19920	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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