CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PsAffx.C115000050_s_at

Gene name
Homology with Arabidopsis Similar to At5g66490: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.84

%ile 98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.85 PsAffx.C115000050_s_at PsAffx.C115000050 - - 2e+0 At5g66490 unknown protein O.I. H.G. S.X.
0.83 92.5 0.88 HgAffx.5776.1.S1_at CB826435 - - 1e+0 At5g59030 COPT1 (copper transporter 1) O.I. H.G. S.X.
0.77 90.3 0.85 HgAffx.11003.1.S1_at CB824101 - - 4e+0 At3g28630 - O.I. H.G. S.X.
0.71 87.8 0.85 PsAffx.C154000024_at PsAffx.C154000024 - - 2e-1 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) O.I. H.G. S.X.
0.71 87.8 0.85 HgAffx.24315.1.S1_at CB374815 - - 9e-1 At4g15930 microtubule motor O.I. H.G. S.X.
0.67 86.1 0.86 PsAffx.C6000193_at PsAffx.C6000193 - - 1e+1 Atmg00450 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.6 99.9 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2 97.4 GSM294268 23_2428.2I.R297P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7 96.8 GSM292448 49_C110.1G.V7G1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6 96.7 GSM292838 18_C211.1L.SLL3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM293641 68_2065.2B.R129U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293082 81_C019.1N.R9N1U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.219678.1.S1_at, orthologous to the query gene, PsAffx.C115000050_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 92.6 PtpAffx.219678.1.S1_at At5g66490 hypothetical protein - 2e+0 At3g43740 leucine-rich repeat family protein O.I. H.G. S.X.
0.25 43.6 PtpAffx.216777.1.S1_at At5g66490 hypothetical protein - 2e-1 At5g59950 RNA and export factor-binding protein, putative O.I. H.G. S.X.
0.18 30.8 PtpAffx.112605.1.A1_at At5g66490 - - 2e-1 At5g65940 CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) O.I. H.G. S.X.
0.18 30.8 PtpAffx.5884.1.A1_at At5g66490 - - 8e-1 At1g73540 atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21) O.I. H.G. S.X.
0.16 26.9 PtpAffx.205451.1.S1_at At5g66490 - - 2e+0 At4g33600 unknown protein O.I. H.G. S.X.
0.16 26.9 PtpAffx.222082.1.S1_x_at At5g66490 hypothetical protein - 6e-2 At5g53590 auxin-responsive family protein O.I. H.G. S.X.
0.13 21.6 PtpAffx.209680.1.S1_at At5g66490 hypothetical protein - 1e-2 At3g59200 F-box family protein O.I. H.G. S.X.
0.11 18.1 PtpAffx.116760.1.A1_at At5g66490 - - 9e+0 At3g49920 VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) O.I. H.G. S.X.
0.09 14.6 PtpAffx.202362.1.S1_at At5g66490 hypothetical protein - 5e-3 At3g09760 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.08 12.9 Ptp.7615.1.S1_at At5g66490 - - 6e-1 At4g18810 binding / catalytic/ transcription repressor O.I. H.G. S.X.
0.07 11.6 PtpAffx.214427.1.S1_at At5g66490 hypothetical protein - 1e+0 At3g04310 unknown protein O.I. H.G. S.X.
0.07 11.6 PtpAffx.29026.1.S1_at At5g66490 - - 7e+0 At4g36560 unknown protein O.I. H.G. S.X.
0.04 6.9 PtpAffx.208996.1.S1_s_at At5g66490 ZIP transporter - 8e-6 At4g19690 IRT1 (iron-regulated transporter 1) O.I. H.G. S.X.
0.03 5.2 PtpAffx.69474.1.A1_at At5g66490 - - 8e-1 At2g14560 LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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