Co-expression analysis

Gene ID	PsAffx.C115000050_s_at
Gene name
Homology with Arabidopsis	Similar to At5g66490: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.84
%ile	98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.85	PsAffx.C115000050_s_at	PsAffx.C115000050	-	-	2e+0	At5g66490	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	92.5	0.88	HgAffx.5776.1.S1_at	CB826435	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.85	HgAffx.11003.1.S1_at	CB824101	-	-	4e+0	At3g28630	-	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.85	PsAffx.C154000024_at	PsAffx.C154000024	-	-	2e-1	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.85	HgAffx.24315.1.S1_at	CB374815	-	-	9e-1	At4g15930	microtubule motor	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.86	PsAffx.C6000193_at	PsAffx.C6000193	-	-	1e+1	Atmg00450	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
46.6	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, Contig8798_at, orthologous to the query gene, PsAffx.C115000050_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	Contig8798_at	At5g66490	-	-	3e-5	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig6209_at	At5g66490	-	-	1e-1	At4g23870	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig4192_at	At5g66490	-	-	2e-4	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig3470_at	At5g66490	-	-	1e-11	At2g37340	RSZ33	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig4298_at	At5g66490	-	-	4e-7	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.26	30.4	HM04B09u_s_at	At5g66490	-	-	3e+0	At5g27606	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig8312_at	At5g66490	-	-	1e-1	At3g23610	dual specificity protein phosphatase (DsPTP1)	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig19853_at	At5g66490	-	-	5e+0	At5g11220	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig3667_s_at	At5g66490	thaumatin-like protein TLP8 /// m12 protein	-	7e-18	At4g26930	MYB97 (myb domain protein 97)	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig2928_s_at	At5g66490	-	-	7e-32	At5g09660	PMDH2 (peroxisomal NAD-malate dehydrogenase 2)	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig7320_at	At5g66490	-	-	2e-1	At1g26690	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig16573_at	At5g66490	-	-	3e-2	At3g56610	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig8140_at	At5g66490	-	-	7e+0	At3g04100	AGL57	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig8678_at	At5g66490	-	-	3e-17	At1g31230	AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I)	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig694_at	At5g66490	-	-	5e-6	At1g32900	starch synthase, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig336_at	At5g66490	-	-	4e-1	At5g66580	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	HX03D08u_s_at	At5g66490	-	-	6e-1	At1g04960	-	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig6874_at	At5g66490	-	-	8e+0	At5g14360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig9787_at	At5g66490	-	-	4e+0	At2g27505	-	O.I.	H.G.	S.X.	Please select
0.21	22.6	HB24H11r_s_at	At5g66490	-	-	8e-1	At3g10590	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig8177_at	At5g66490	-	-	7e-3	At2g18400	ribosomal protein L6 family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig5853_at	At5g66490	-	-	3e-1	At1g64140	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig11072_at	At5g66490	-	-	1e-8	At1g11020	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig6152_at	At5g66490	-	-	7e-2	At3g59140	ATMRP14	O.I.	H.G.	S.X.	Please select
0.18	18.2	HM02H15u_s_at	At5g66490	-	-	5e+0	At2g16030	methyltransferase	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig8857_at	At5g66490	-	-	4e-1	At2g37600	60S ribosomal protein L36 (RPL36A)	O.I.	H.G.	S.X.	Please select
0.08	6.5	Contig4131_at	At5g66490	-	-	2e-23	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	O.I.	H.G.	S.X.	Please select
0.08	6.5	Contig16867_at	At5g66490	-	-	7e-9	At3g02690	integral membrane family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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