Co-expression analysis

Gene ID	PsAffx.C1023000002_at
Gene name
Homology with Arabidopsis	Similar to At4g21540: SPHK1 (SPHINGOSINE KINASE 1) (HF=3e+0)
Module size	7 genes
NF	0.21
%ile	44.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.41	58.1	0.94	PsAffx.C1023000002_at	PsAffx.C1023000002	-	-	3e+0	At4g21540	SPHK1 (SPHINGOSINE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.94	HgAffx.21514.1.S1_at	CD749005	-	-	5e-1	At5g45875	SCRL27 (SCR-Like 27)	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.94	PsAffx.C178000021_at	PsAffx.C178000021	-	-	1e+0	At1g10060	branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.94	PsAffx.C1000091_at	PsAffx.C1000091	-	-	4e-1	At2g21490	LEA (DEHYDRIN LEA)	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.94	PsAffx.CL1693Contig1_at	PsAffx.CL1693Contig1	-	-	6e+0	At5g20190	binding	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.94	HgAffx.9055.1.S1_at	CB379446	-	-	2e+0	At5g49015	Expressed protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.94	HgAffx.18004.1.S1_at	CB279764	-	-	2e+0	At4g13000	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.9	99.4	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
5.0	98.0	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM244813	18_VP9.I5U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.1	95.8	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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