CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0639700

Gene name
Homology with Arabidopsis Similar to At5g15050: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (HF=5e-8)

Module size 6 genes

NF 0.49

%ile 65.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.95 Os12g0639700 AK069880.1 - - 5e-8 At5g15050 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein O.I. H.G. S.X.
0.80 94.6 0.95 Os12g0556400 AK062903.1 - Conserved hypothetical protein 2e-5 At1g16000 unknown protein O.I. H.G. S.X.
0.73 91.1 0.95 Os04g0620500 CB667511 - Hypothetical protein 2e-2 At1g30470 SIT4 phosphatase-associated family protein O.I. H.G. S.X.
0.47 62.3 0.96 Os09g0415800 AK071371.1 - Phosphofructokinase family protein 5e-18 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) O.I. H.G. S.X.
0.32 36.3 0.95 Os01g0496900 AK069894.1 - P-type trefoil domain containing protein 2e-39 At3g16200 unknown protein O.I. H.G. S.X.
0.31 34.5 0.95 Os03g0253800 AK120111.1 - Hypothetical protein 9e-8 At4g00026 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	68.0	0.95	Os12g0639700	AK069880.1	-	-	5e-8	At5g15050	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.
0.80	94.6	0.95	Os12g0556400	AK062903.1	-	Conserved hypothetical protein	2e-5	At1g16000	unknown protein	O.I.	H.G.	S.X.
0.73	91.1	0.95	Os04g0620500	CB667511	-	Hypothetical protein	2e-2	At1g30470	SIT4 phosphatase-associated family protein	O.I.	H.G.	S.X.
0.47	62.3	0.96	Os09g0415800	AK071371.1	-	Phosphofructokinase family protein	5e-18	At2g22480	PFK5 (PHOSPHOFRUCTOKINASE 5)	O.I.	H.G.	S.X.
0.32	36.3	0.95	Os01g0496900	AK069894.1	-	P-type trefoil domain containing protein	2e-39	At3g16200	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.95	Os03g0253800	AK120111.1	-	Hypothetical protein	9e-8	At4g00026	-	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.2	0.90	Os04g0574100	AK069178.1	-	Exostosin-like family protein	4e+0	At4g17800	DNA-binding protein-related	O.I.	H.G.	S.X.
0.57	77.0	0.93	Os05g0440800	AK073901.1	-	Protein kinase domain containing protein	5e-53	At3g44200	NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")	O.I.	H.G.	S.X.
0.57	77.0	0.95	Os01g0304300	AA753649	-	Protein of unknown function DUF616 family protein	1e+1	At5g15760	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	O.I.	H.G.	S.X.
0.38	46.9	0.91	Os04g0567800	AB028129.1	-	Dof zinc finger protein	9e-17	At2g37590	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.
0.38	46.9	0.93	Os03g0120200	AK121787.1	-	Remorin, C-terminal region domain containingprotein	8e-7	At2g02170	remorin family protein	O.I.	H.G.	S.X.
0.36	44.0	0.94	Os05g0108300	AY336987.1	-	MAP kinase-like protein	1e-9	At3g48260	WNK3	O.I.	H.G.	S.X.
0.36	44.0	0.94	Os08g0384000	CB627303	-	Cytochrome b561 family protein	2e+0	At2g33220	-	O.I.	H.G.	S.X.
0.35	41.7	0.94	Os08g0503800	AK101954.1	-	Beta-(1,2)-xylosyltransferase (EC 2.4.2.38)	3e-1	At5g55500	XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)	O.I.	H.G.	S.X.
0.33	38.8	0.94	Os06g0731900	AK064258.1	-	Protein of unknown function DUF707 family protein	2e-7	At2g28310	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.94	Os05g0176500	AK059866.1	-	ATP10 family protein	2e+0	At4g01915	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	0.91	Os10g0579100	AK102587.1	-	Protein of unknown function DUF221 domaincontaining protein	7e-21	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.
0.32	36.3	0.95	Os01g0328500	AK058517.1	-	Bucentaur or craniofacial development familyprotein	3e-12	At5g30490	-	O.I.	H.G.	S.X.
0.31	34.5	0.92	Os01g0711000	AK103899.1	-	Vacuolar ATPase B subunit	1e-92	At1g20260	hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism	O.I.	H.G.	S.X.
0.31	34.5	0.94	Os06g0233200	AK108060.1	-	RING zinc finger protein-like	6e-5	At5g40250	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.31	34.5	0.95	Os09g0537600	AK061004.1	-	Cyclophilin B	3e-18	At4g34960	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os02g0219400	AK072526.1	-	GPI-anchor transamidase precursor (EC 3.-.-.-)(GPI transamidase) (Phosphatidylinositol-glycanbiosynthesis, class K protein) (PIG-K) (hGPI8)	2e-109	At1g08750	GPI-anchor transamidase, putative	O.I.	H.G.	S.X.
0.29	31.1	0.88	Os07g0197100	AF372832.1	-	Hexokinase	6e-2	At2g19860	HXK2 (HEXOKINASE 2)	O.I.	H.G.	S.X.
0.29	31.1	0.95	Os08g0107900	CR285548	-	Mago nashi-like protein	2e-18	At1g02140	MAGO (MAGO NASHI)	O.I.	H.G.	S.X.
0.27	27.5	0.93	Os05g0459000	AK106756.1	-	C-myb-like transcription factor (Fragment)	1e-9	At3g09370	MYB3R-3 (myb domain protein 3R-3)	O.I.	H.G.	S.X.
0.27	27.5	0.96	Os09g0551300	AK066732.1	-	16S rRNA m5C967 methyltransferase domaincontaining protein	1e-6	At5g55920	nucleolar protein, putative	O.I.	H.G.	S.X.
0.25	24.1	0.95	Os02g0197500	9630.m00956	-	Regulator of chromosomecondensation/beta-lactamase-inhibitor protein II domaincontaining protein	6e-5	At5g48330	regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.9 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
12.9	98.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5	98.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4	98.2	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3	98.2	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1	98.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7	98.1	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.043 1 GO:0006096 The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.043	1	GO:0006096	The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os12g0639700
Gene name
Homology with Arabidopsis	Similar to At5g15050: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (HF=5e-8)
Module size	6 genes
NF	0.49
%ile	65.2

Co-expression analysis

Gene ID Os12g0639700 Gene name Homology with ArabidopsisSimilar to At5g15050: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (HF=5e-8) Module size 6 genes NF 0.49 %ile 65.2

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os12g0639700

Gene name
Homology with Arabidopsis Similar to At5g15050: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (HF=5e-8)

Module size 6 genes

NF 0.49

%ile 65.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays