CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0639700

Gene name
Homology with Arabidopsis Similar to At5g15050: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (HF=5e-8)

Module size 6 genes

NF 0.49

%ile 65.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.95 Os12g0639700 AK069880.1 - - 5e-8 At5g15050 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein O.I. H.G. S.X.
0.80 94.6 0.95 Os12g0556400 AK062903.1 - Conserved hypothetical protein 2e-5 At1g16000 unknown protein O.I. H.G. S.X.
0.73 91.1 0.95 Os04g0620500 CB667511 - Hypothetical protein 2e-2 At1g30470 SIT4 phosphatase-associated family protein O.I. H.G. S.X.
0.47 62.3 0.96 Os09g0415800 AK071371.1 - Phosphofructokinase family protein 5e-18 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) O.I. H.G. S.X.
0.32 36.3 0.95 Os01g0496900 AK069894.1 - P-type trefoil domain containing protein 2e-39 At3g16200 unknown protein O.I. H.G. S.X.
0.31 34.5 0.95 Os03g0253800 AK120111.1 - Hypothetical protein 9e-8 At4g00026 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.9 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.043 1 GO:0006096 The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.

Inter-species module comparison

A co-expression module including the wheat gene, Ta.12174.1.A1_at, orthologous to the query gene, Os12g0639700

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.6 Ta.12174.1.A1_at At5g15050 - - 1e-14 At3g03690 UNE7 (unfertilized embryo sac 7) O.I. H.G. S.X.
0.32 44.4 TaAffx.130636.1.S1_at At5g15050 - - 7e+0 At4g24930 thylakoid lumenal 17.9 kDa protein, chloroplast O.I. H.G. S.X.
0.29 39.2 TaAffx.111033.1.A1_at At5g15050 - - 9e-1 At1g26530 unknown protein O.I. H.G. S.X.
0.28 39.2 Ta.5749.1.S1_a_at At5g15050 - - 3e-2 At2g32710 KRP4 O.I. H.G. S.X.
0.26 33.6 Ta.12189.1.A1_at At5g15050 - - 1e+0 At3g28560 - O.I. H.G. S.X.
0.25 32.1 Ta.3894.1.S1_at At5g15050 - - 2e+0 At2g15590 unknown protein O.I. H.G. S.X.
0.23 29.0 Ta.10612.1.S1_at At5g15050 - - 2e-1 At4g32400 SHS1 (SODIUM HYPERSENSITIVE 1) O.I. H.G. S.X.
0.23 29.0 TaAffx.72129.1.S1_at At5g15050 - - 6e-1 At5g22520 unknown protein O.I. H.G. S.X.
0.23 29.0 Ta.3337.1.S1_s_at At5g15050 - - 7e-10 At5g09860 nuclear matrix protein-related O.I. H.G. S.X.
0.21 25.5 TaAffx.130361.1.S1_at At5g15050 - - 3e-8 At1g14990 unknown protein O.I. H.G. S.X.
0.18 21.0 Ta.16758.1.A1_at At5g15050 - - 3e+0 At1g21430 YUC11 O.I. H.G. S.X.
0.18 21.0 Ta.10616.1.A1_at At5g15050 - - 5e-4 At1g50380 prolyl oligopeptidase family protein O.I. H.G. S.X.
0.18 21.0 Ta.6460.1.S1_s_at At5g15050 PHD zinc finger protein - 4e-11 At2g02470 AL6 (ALFIN-LIKE 6) O.I. H.G. S.X.
0.17 19.8 Ta.6987.1.A1_at At5g15050 - - 4e+0 At1g07610 MT1C O.I. H.G. S.X.
0.17 19.8 Ta.19090.1.S1_at At5g15050 - - 1e+1 At5g42965 nucleic acid binding / ribonuclease H O.I. H.G. S.X.
0.15 17.1 Ta.3974.1.S1_at At5g15050 - - 8e-13 At4g39100 SHL1 (short life) O.I. H.G. S.X.
0.13 14.6 Ta.7571.1.S1_at At5g15050 - - 2e+0 At5g24105 AGP41 (ARABINOGALACTAN-PROTEIN 41) O.I. H.G. S.X.
0.10 11.3 Ta.2915.1.S1_a_at At5g15050 - - 4e+0 At5g48890 transcription factor O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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