CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0639700

Gene name
Homology with Arabidopsis Similar to At5g15050: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (HF=5e-8)

Module size 6 genes

NF 0.49

%ile 65.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.95 Os12g0639700 AK069880.1 - - 5e-8 At5g15050 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein O.I. H.G. S.X.
0.80 94.6 0.95 Os12g0556400 AK062903.1 - Conserved hypothetical protein 2e-5 At1g16000 unknown protein O.I. H.G. S.X.
0.73 91.1 0.95 Os04g0620500 CB667511 - Hypothetical protein 2e-2 At1g30470 SIT4 phosphatase-associated family protein O.I. H.G. S.X.
0.47 62.3 0.96 Os09g0415800 AK071371.1 - Phosphofructokinase family protein 5e-18 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) O.I. H.G. S.X.
0.32 36.3 0.95 Os01g0496900 AK069894.1 - P-type trefoil domain containing protein 2e-39 At3g16200 unknown protein O.I. H.G. S.X.
0.31 34.5 0.95 Os03g0253800 AK120111.1 - Hypothetical protein 9e-8 At4g00026 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.9 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.043 1 GO:0006096 The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.

Inter-species module comparison

A co-expression module including the barley gene, Contig14045_at, orthologous to the query gene, Os12g0639700

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.82 93.1 Contig14045_at At5g15050 - - 2e-18 At3g03690 UNE7 (unfertilized embryo sac 7) O.I. H.G. S.X.
0.78 91.2 Contig14043_at At5g15050 - - 3e-1 At3g18300 unknown protein O.I. H.G. S.X.
0.38 49.5 Contig8813_at At5g15050 - - 4e-23 At5g42990 UBC18 (ubiquitin-conjugating enzyme 18) O.I. H.G. S.X.
0.35 45.1 HVSMEm0017N09r2_at At5g15050 - - 4e+0 At4g25720 QC (GLUTAMINYL CYCLASE) O.I. H.G. S.X.
0.35 45.1 Contig18349_at At5g15050 - - 1e-1 At4g14770 TCX2 (TESMIN/TSO1-LIKE CXC 2) O.I. H.G. S.X.
0.33 42.6 EBem05_SQ003_E07_at At5g15050 - - 5e-2 At1g27710 glycine-rich protein O.I. H.G. S.X.
0.31 38.6 Contig8812_s_at At5g15050 - - 2e+0 At2g03710 SEP4 (SEPALLATA 4) O.I. H.G. S.X.
0.28 35.5 Contig23097_at At5g15050 - - 6e-2 At3g60600 VAP (VESICLE ASSOCIATED PROTEIN) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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