CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0636400

Gene name
Homology with Arabidopsis Similar to At2g26750: epoxide hydrolase, putative (HF=2e-3)

Module size 8 genes

NF 0.25

%ile 24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.86 Os12g0636400 AK106721.1 - - 2e-3 At2g26750 epoxide hydrolase, putative O.I. H.G. S.X.
0.56 76.3 0.87 Os05g0593900 AK058553.1 - C13 endopeptidase NP1 precursor 5e-2 At3g20210 DELTA-VPE O.I. H.G. S.X.
0.28 31.1 0.87 Os02g0139600 AK107052.1 - Dars-prov protein 2e-3 At4g26870 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative O.I. H.G. S.X.
0.22 19.4 0.87 Os05g0143800 AK106538.1 - GH3 auxin-responsive promoter family protein 1e+0 At2g46505 SDH4 O.I. H.G. S.X.
0.21 17.9 0.89 Os10g0578200 AK110534.1 - Cellulose synthase-9 5e-41 At5g16910 CSLD2 (CELLULOSE-SYNTHASE LIKE D2) O.I. H.G. S.X.
0.16 11.3 0.89 Os04g0534200 AK109583.1 - Receptor kinase-like protein 8e-4 At5g41180 leucine-rich repeat protein kinase, putative O.I. H.G. S.X.
0.14 9.3 0.89 Os02g0186900 9630.m00853 - Cytochrome P450 family protein 8e-1 At4g37410 CYP81F4 O.I. H.G. S.X.
0.13 8.2 0.88 Os02g0578300 AK105275.1 - - 2e-7 At1g22400 UGT85A1 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.3 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.6 98.7 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
15.2 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 1 GO:0006422 The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
0.039 1 GO:0006418 The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage