CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0632900

Gene name
Homology with Arabidopsis Similar to At5g49660: leucine-rich repeat transmembrane protein kinase, putative (HF=3e-5)

Module size 8 genes

NF 0.03

%ile 2.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.78 Os12g0632900 AK071957.1 - Receptor protein kinase 3e-5 At5g49660 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.26 25.6 0.77 Os05g0214300 9633.m01098 - MtN3 and saliva related transmembrane proteinfamily protein 5e-6 At4g25010 nodulin MtN3 family protein O.I. H.G. S.X.
0.11 6.5 0.82 Os11g0235200 AK100802.1 - TGF-beta receptor, type I/II extracellular regionfamily protein 4e-22 At1g33440 proton-dependent oligopeptide transport (POT) family protein O.I. H.G. S.X.
0.08 4.2 0.78 Os03g0647600 AK106398.1 - Nf-Y-A subunit 1e+0 At4g17310 unknown protein O.I. H.G. S.X.
0.07 3.7 0.82 Os12g0618600 AK073742.1 - Transcriptional activator HAP2 5e-2 At5g06510 NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10) O.I. H.G. S.X.
0.04 2.0 0.82 Os06g0216700 AK101397.1 - Cupredoxin domain containing protein 5e-1 At2g46410 CPC (CAPRICE) O.I. H.G. S.X.
0.02 1.0 0.78 Os08g0475100 AK105839.1 - Esterase/lipase/thioesterase domain containingprotein 7e-1 At5g16080 AtCXE17 (Arabidopsis thaliana carboxyesterase 17) O.I. H.G. S.X.
0.01 0.5 0.78 Os12g0194900 AK069508.1 - Amino acid carrier (Fragment) 4e-3 At5g23810 AAP7 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
37.5 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.6 99.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.8 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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