CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0626100

Gene name
Homology with Arabidopsis Similar to At3g58180: PBS lyase HEAT-like repeat-containing protein (HF=3e-6)

Module size 19 genes

NF 0.29

%ile 29.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 96.8 0.93 Os12g0626100 AK059924.1 - ARM repeat fold domain containing protein 3e-6 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.47 62.3 0.93 Os04g0502300 AK120520.1 - 40S ribosomal protein S11 6e-59 At3g48930 EMB1080 (embryo defective 1080) O.I. H.G. S.X.
0.43 55.4 0.94 Os08g0517900 AK064304.1 - 30S ribosomal protein S16 6e+0 At4g03120 proline-rich family protein O.I. H.G. S.X.
0.35 41.7 0.95 Os01g0264800 AK059509.1 - Breast carcinoma amplified sequence 2 familyprotein 2e-1 At5g53680 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.34 40.0 0.94 Os08g0154700 CF324539 - Small nuclear ribonucleoprotein (Sm protein)family protein 9e-24 At1g03330 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative O.I. H.G. S.X.
0.33 38.8 0.94 Os05g0404600 AK105210.1 - CW-type Zn-finger domain containing protein 2e+0 At2g02380 ATGSTZ2 O.I. H.G. S.X.
0.33 38.8 0.95 Os04g0484900 AK122179.1 - Ypl086cp 2e-147 At5g50320 ELO3 (ELONGATA 3) O.I. H.G. S.X.
0.29 31.1 0.96 Os02g0235600 AK120417.1 - 60S ribosomal protein L11 (L5) 4e-100 At4g18730 RPL16B O.I. H.G. S.X.
0.27 27.5 0.95 Os08g0524000 AK067169.1 - Signal recognition particle receptor betasubunit-like protein 2e-4 At2g18770 signal recognition particle binding O.I. H.G. S.X.
0.27 27.5 0.93 Os04g0595800 AK058642.1 - Secretory carrier membrane protein 2e-16 At1g32050 secretory carrier membrane protein (SCAMP) family protein O.I. H.G. S.X.
0.27 27.5 0.93 Os03g0115200 C98021 - YOR3513c protein (Fragment) 1e-4 At3g13230 RNA binding O.I. H.G. S.X.
0.25 24.1 0.96 Os03g0586600 AK070943.1 - DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KDPOLYPEPTIDE(RPABC6) 1e-32 At5g51940 NRPB6A O.I. H.G. S.X.
0.24 22.4 0.94 Os06g0150100 AK068890.1 - Conserved hypothetical protein 6e-1 At4g04780 MED21 (MEDIATOR 21) O.I. H.G. S.X.
0.24 22.4 0.95 Os01g0620100 AK070122.1 - WD40-like domain containing protein 6e-4 At1g64350 SEH1H O.I. H.G. S.X.
0.21 17.9 0.96 Os05g0357600 AK111540.1 - Developmentally regulated GTP binding protein 7e-159 At1g72660 developmentally regulated GTP-binding protein, putative O.I. H.G. S.X.
0.21 17.9 0.95 Os06g0300700 AK071388.1 - Hypothetical protein 7e-1 At2g17420 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) O.I. H.G. S.X.
0.19 15.1 0.95 Os01g0514000 AK063801.1 - 50S ribosomal protein L24e 1e-10 At2g44860 60S ribosomal protein L24, putative O.I. H.G. S.X.
0.19 15.1 0.95 Os12g0540900 AK102417.1 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2)(Tryptophan--tRNA ligase) (TrpRS) 3e-19 At3g04600 tRNA synthetase class I (W and Y) family protein O.I. H.G. S.X.
0.18 13.7 0.94 Os02g0102700 AK061193.1 - Small nuclear ribonucleoprotein Sm D3 (snRNP coreprotein D3) (Sm-D3) 8e-9 At1g20580 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.3 99.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.7 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.3 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.121 2 GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
0.111 2 GO:0008380 The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
0.100 1 GO:0006351 The synthesis of RNA on a template of DNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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