Co-expression analysis

Gene ID Os12g0612100
Gene name
Homology with ArabidopsisSimilar to At5g38290: peptidyl-tRNA hydrolase family protein (HF=9e-1)
Module size 7 genes
NF 0.65
%ile 88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7391.10.96Os12g0612100AK101614.1-Hypothetical protein9e-1At5g38290peptidyl-tRNA hydrolase family proteinO.I.H.G.S.X.
0.7793.10.96Os10g0464400AY332469.1-Riboflavin kinase / FAD synthetase family protein3e-22At4g21470ATFMN/FHY (riboflavin kinase/FMN hydrolase)O.I.H.G.S.X.
0.6079.70.96Os12g0620400AK072503.1-Methyl-CpG binding domain containing protein8e-1At5g43175basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.6079.70.96Os09g0323100AK069027.1-Zn-finger, RING domain containing protein1e-3At1g80400zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5676.30.96Os01g0104100AK072797.1-The start codon is not identified.1e-2At3g54360protein binding / zinc ion bindingO.I.H.G.S.X.
0.5573.70.96Os02g0773300AK071811.1-Pyridoxal phosphate-dependent deaminase familyprotein3e-12At1g48420D-CDES (D-CYSTEINE DESULFHYDRASE)O.I.H.G.S.X.
0.5269.60.96Os05g0101200AY262026.1-Peroxisomal membrane anchor protein (Pex14p)domain containing protein1e+0At5g61660glycine-rich proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.399.9GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
9.998.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.497.2GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.796.9GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.296.7GSM275413Azucena root tip_Buckled at the wax layer_rep3GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varietiesLink to GEO
5.296.7GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
4.696.3GSM275412Azucena root tip Buckled at the wax layer_rep2GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varietiesLink to GEO
4.496.2GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2221GO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.Link to AmiGO
0.2221GO:0009414A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.Link to AmiGO
0.2221GO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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