CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0606900

Gene name
Homology with Arabidopsis Similar to At5g19151: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.25

%ile 25.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.96 Os12g0606900 AK072659.1 - Hypothetical protein 2e+0 At5g19151 unknown protein O.I. H.G. S.X.
0.40 51.1 0.97 Os02g0474300 AK122152.1 - Hypothetical protein 6e-7 At4g31210 DNA topoisomerase family protein O.I. H.G. S.X.
0.33 38.8 0.96 Os08g0100600 AK102372.1 - - 2e+0 At2g18721 unknown protein O.I. H.G. S.X.
0.23 21.2 0.96 Os03g0718200 AK063808.1 - SWIM Zn-finger domain containing protein 4e-1 At3g57310 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.21 17.9 0.96 Os01g0934300 AK072640.1 - Flowering-time protein isoform beta 5e-4 At4g02560 LD (luminidependens) O.I. H.G. S.X.
0.11 6.5 0.96 Os08g0485600 AK064883.1 - Zn-finger, C2H2 type domain containing protein 2e+0 At3g60420 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.9 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.3 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage