CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0604700

Gene name
Homology with Arabidopsis Similar to At3g63280: ATNEK4 (NIMA-RELATED KINASE 4) (HF=1e-15)

Module size 17 genes

NF 0.43

%ile 54.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.93 Os12g0604700 AK072382.1 - LSTK-1-like kinase 1e-15 At3g63280 ATNEK4 (NIMA-RELATED KINASE 4) O.I. H.G. S.X.
0.63 82.7 0.93 Os03g0787200 AK103438.1 - IQ calmodulin-binding region domain containingprotein 2e-11 At3g22190 IQD5 (IQ-domain 5) O.I. H.G. S.X.
0.57 77.0 0.93 Os05g0168800 AK101183.1 - Spectrin repeat containing protein 5e-3 At5g58320 kinase interacting protein-related O.I. H.G. S.X.
0.57 77.0 0.93 Os06g0609500 AK071731.1 - Myb, DNA-binding domain containing protein 3e-6 At2g01060 myb family transcription factor O.I. H.G. S.X.
0.51 68.7 0.93 Os02g0290500 AK065628.1 - Ubiquitin domain containing protein 2e-9 At1g64460 phosphatidylinositol 3- and 4-kinase family protein O.I. H.G. S.X.
0.49 64.4 0.93 Os01g0744000 AK101026.1 - Kinesin heavy chain (Fragment) 2e-24 At1g18410 kinesin motor protein-related O.I. H.G. S.X.
0.44 58.1 0.93 Os01g0801000 AK101426.1 - Apurinic endonuclease-redox protein (DNA-(apurinicor apyrimidinic site) lyase) (EC 4.2.99.18) 3e-7 At2g41460 ARP O.I. H.G. S.X.
0.42 53.9 0.92 Os05g0394200 CR286943 - Protein of unknown function DUF630 domaincontaining protein 1e+0 At2g32580 unknown protein O.I. H.G. S.X.
0.42 53.9 0.93 Os03g0308200 AK062228.1 - ARM repeat fold domain containing protein 5e-7 At5g26850 - O.I. H.G. S.X.
0.37 45.0 0.94 Os09g0549400 AK103727.1 - Conserved hypothetical protein 3e+0 At5g52800 DNA primase O.I. H.G. S.X.
0.37 45.0 0.93 Os05g0555100 AJ272423.1 - Protein phosphatase 2A B'kappa subunit 1e+0 At5g03470 ATB' ALPHA O.I. H.G. S.X.
0.34 40.0 0.94 Os03g0287700 AK058301.1 - Hypothetical protein 2e+0 At2g39820 eukaryotic translation initiation factor 6, putative / eIF-6, putative O.I. H.G. S.X.
0.33 38.8 0.94 Os10g0497600 AK103003.1 - Protein kinase domain containing protein 1e-25 At3g59110 protein kinase family protein O.I. H.G. S.X.
0.31 34.5 0.93 Os02g0705300 AK101936.1 - Tubby-like protein 2 1e-7 At1g25280 AtTLP10 (TUBBY LIKE PROTEIN 10) O.I. H.G. S.X.
0.31 34.5 0.95 Os02g0720200 AK121803.1 - 65kD microtubule associated protein 3e-1 At4g26760 MAP65-2 O.I. H.G. S.X.
0.29 31.1 0.93 Os05g0498300 AK101127.1 - MutS III domain containing protein 7e-12 At3g20475 MSH5 (MUTS-HOMOLOGUE 5) O.I. H.G. S.X.
0.24 22.4 0.93 Os02g0200800 AB118005.1 - Targeting for Xklp2 family protein 6e-8 At4g32330 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.7 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.8 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.6 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.054 1 GO:0007018 Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins.
0.036 1 GO:0006281 The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
0.025 1 GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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