CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0599000

Gene name
Homology with Arabidopsis Similar to At3g14260: unknown protein (HF=3e-2)

Module size 9 genes

NF 0.65

%ile 87.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 0.98 Os12g0599000 9640.m03982 - - 3e-2 At3g14260 unknown protein O.I. H.G. S.X.
0.71 89.6 0.99 Os03g0776600 9631.m05531 - - 4e+0 At5g26790 unknown protein O.I. H.G. S.X.
0.71 89.6 0.99 Os01g0662900 9629.m04542 - - 1e+0 At3g49845 - O.I. H.G. S.X.
0.70 88.4 0.99 Os11g0213500 9630.m04131 - TPR-like domain containing protein 2e+0 At4g36240 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.67 87.2 0.99 Os08g0396400 9636.m03051 - - 4e+0 At5g22580 - O.I. H.G. S.X.
0.63 82.7 0.99 Os08g0360200 9636.m02684 - Conserved hypothetical protein 2e-1 At1g33055 unknown protein O.I. H.G. S.X.
0.61 81.2 0.99 Os07g0614400 AK103733.1 - Conserved hypothetical protein 5e-5 At1g72490 unknown protein O.I. H.G. S.X.
0.59 78.0 0.99 Os08g0166100 9636.m00605 - - 5e-1 At1g63550 - O.I. H.G. S.X.
0.57 77.0 0.99 Os04g0113400 NM_187296.1 - - 2e-1 At1g10140 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.3 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.3 98.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
14.0 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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