CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0589400

Gene name
Homology with Arabidopsis Similar to At5g61440: ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5) (HF=4e-1)

Module size 11 genes

NF 0.54

%ile 72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.98 Os12g0589400 AK119349.1 - Hypothetical protein 4e-1 At5g61440 ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5) O.I. H.G. S.X.
0.58 77.0 0.98 Os01g0299200 NM_189182.1 - - 2e-1 At1g56570 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.57 77.0 0.98 Os07g0411700 NM_187822.1 - - 3e-1 At3g07565 DNA binding O.I. H.G. S.X.
0.53 71.3 0.98 Os05g0469900 AK109700.1 - Conserved hypothetical protein 9e-1 At1g62640 KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III) O.I. H.G. S.X.
0.52 69.6 0.99 Os02g0188900 9630.m00874 - Cyclin-like F-box domain containing protein 6e-1 At3g48920 AtMYB45 (myb domain protein 45) O.I. H.G. S.X.
0.50 68.0 0.98 Os04g0502100 AK066956.1 - Conserved hypothetical protein 3e-1 At4g32290 unknown protein O.I. H.G. S.X.
0.50 68.0 0.99 Os04g0442700 AK119975.1 - Hypothetical protein 6e+0 At5g43980 PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1) O.I. H.G. S.X.
0.49 64.4 0.98 Os08g0368300 9636.m02778 - - 3e+0 At4g10720 ankyrin repeat family protein O.I. H.G. S.X.
0.48 63.7 0.99 Os02g0611000 AK107511.1 - Hypothetical protein 4e+0 At3g20860 ATNEK5 (NIMA-RELATED KINASE5) O.I. H.G. S.X.
0.41 52.4 0.99 Os09g0239150 9637.m00389 - - 5e-2 At5g54410 unknown protein O.I. H.G. S.X.
0.39 48.3 0.98 Os02g0463100 9630.m02493 - - 5e-3 At4g09660 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
39.2 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
23.2 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.8 98.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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