CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0586600

Gene name
Homology with Arabidopsis Similar to At2g22950: calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) (HF=2e-59)

Module size 7 genes

NF 0.45

%ile 57.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.96 Os12g0586600 AK100436.1 - Plasma membrane Ca2+-ATPase 2e-59 At2g22950 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) O.I. H.G. S.X.
0.50 68.0 0.96 Os01g0355600 NM_193973.1 - Galactose-binding like domain containing protein 6e-7 At3g59770 SAC9 O.I. H.G. S.X.
0.50 68.0 0.97 Os03g0833300 AK065741.1 - SBP domain containing protein 1e-4 At2g47070 SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1) O.I. H.G. S.X.
0.44 58.1 0.97 Os10g0575200 AK066761.1 - Protein psi1 (Protein psi) 1e-30 At2g26890 GRV2 (GRAVITROPISM DEFECTIVE 2) O.I. H.G. S.X.
0.38 46.9 0.97 Os03g0281600 AK070260.1 - Ca2+-ATPase 1e-63 At1g07670 calcium-transporting ATPase O.I. H.G. S.X.
0.29 31.1 0.97 Os04g0600800 9632.m04940 - Conserved hypothetical protein 1e-25 At4g27630 GTG2 (GPCR-TYPE G PROTEIN 2) O.I. H.G. S.X.
0.26 25.6 0.97 Os03g0427900 AU078411 - U box domain containing protein 1e-4 At5g15400 U-box domain-containing protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.0 99.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.182 1 GO:0006816 The directed movement of calcium (Ca) ions into, out of, within or between cells.
0.105 1 GO:0009405 The set of specific processes that generate the ability of an organism to cause disease in another.
0.056 1 GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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