CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0571300

Gene name
Homology with Arabidopsis Similar to At5g10410: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (HF=2e+0)

Module size 6 genes

NF 0.25

%ile 24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.87 Os12g0571300 AK110663.1 - Conserved hypothetical protein 2e+0 At5g10410 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related O.I. H.G. S.X.
0.60 79.7 0.87 Os06g0140400 AK102692.1 - DNA-binding protein (Homeodomain-leucine zippertranscription factor) 2e-4 At3g60390 HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3) O.I. H.G. S.X.
0.19 15.1 0.89 Os12g0554800 AK105676.1 - Polygalacturonase-like protein 6e-11 At5g49215 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein O.I. H.G. S.X.
0.17 12.6 0.87 Os05g0430700 AK121485.1 - Protein of unknown function DUF803 family protein 3e-4 At2g21120 unknown protein O.I. H.G. S.X.
0.17 12.6 0.90 Os09g0452200 AK106042.1 - LysM-domain GPI-anchored protein 1 precursor.Splice isoform 2 3e+0 At2g17705 unknown protein O.I. H.G. S.X.
0.14 9.3 0.87 Os08g0546900 AU197913 - NC domain containing protein 4e+0 At5g59490 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
43.0 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.9 99.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.3 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.7 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.077 1 GO:0016998 The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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