Co-expression analysis

Gene ID Os12g0556400
Gene name
Homology with ArabidopsisSimilar to At1g16000: unknown protein (HF=2e-5)
Module size 6 genes
NF 0.53
%ile 71.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.60.95Os12g0556400AK062903.1-Conserved hypothetical protein2e-5At1g16000unknown proteinO.I.H.G.S.X.
0.6079.70.96Os04g0620500CB667511-Hypothetical protein2e-2At1g30470SIT4 phosphatase-associated family proteinO.I.H.G.S.X.
0.4762.30.96Os09g0415800AK071371.1-Phosphofructokinase family protein5e-18At2g22480PFK5 (PHOSPHOFRUCTOKINASE 5)O.I.H.G.S.X.
0.4660.90.96Os03g0253800AK120111.1-Hypothetical protein9e-8At4g00026-O.I.H.G.S.X.
0.4355.40.96Os02g0219400AK072526.1-GPI-anchor transamidase precursor (EC 3.-.-.-)(GPI transamidase) (Phosphatidylinositol-glycanbiosynthesis, class K protein) (PIG-K) (hGPI8)2e-109At1g08750GPI-anchor transamidase, putativeO.I.H.G.S.X.
0.3338.80.96Os03g03775009631.m02555-Conserved hypothetical protein3e-4At5g12290DGS1 (DGD1 SUPPRESSOR 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.098.2GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.898.1GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.197.9GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.997.6GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.797.6GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.697.5GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.697.5GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.897.3GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0431GO:0006096The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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