CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0548700

Gene name
Homology with Arabidopsis Similar to At4g14805: protease inhibitor/seed storage/lipid transfer protein (LTP)-related (HF=1e+0)

Module size 6 genes

NF 0.70

%ile 93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.71 Os12g0548700 AK058739.1 - CI2C 1e+0 At4g14805 protease inhibitor/seed storage/lipid transfer protein (LTP)-related O.I. H.G. S.X.
0.83 95.8 0.75 Os03g0836800 AK061197.1 - Peptidase M20 family protein 9e+0 At5g38900 DSBA oxidoreductase family protein O.I. H.G. S.X.
0.80 94.6 0.83 Os05g0153300 9633.m00532 - Lipase, class 3 family protein 3e+0 At2g20740 - O.I. H.G. S.X.
0.67 87.2 0.76 Os06g0705400 AK062667.1 - Nonspecific lipid-transfer protein 2P (LTP2P)(Lipid transfer protein 2 isoform 2) (LTP2-2) (7 kDalipid transfer protein 2) 5e+0 At4g13480 AtMYB79 (myb domain protein 79) O.I. H.G. S.X.
0.53 71.3 0.71 Os01g0348800 AK062553.1 - Salt-stress induced protein (Salt protein) 1e+0 At5g58570 unknown protein O.I. H.G. S.X.
0.35 41.7 0.70 Os03g0738600 AK073529.1 - Lipoxygenase L-2 (EC 1.13.11.12) 2e+0 At1g55020 LOX1 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.0 97.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.4 96.8 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
5.2 96.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2 96.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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