CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0547000

Gene name
Homology with Arabidopsis Similar to At2g37530: unknown protein (HF=4e+0)

Module size 6 genes

NF 0.80

%ile 98.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.98 Os12g0547000 9640.m03491 - - 4e+0 At2g37530 unknown protein O.I. H.G. S.X.
0.91 98.9 0.98 Os04g0293800 9632.m02105 - - 1e+0 At2g42820 HVA22F (HVA22-LIKE PROTEIN F) O.I. H.G. S.X.
0.83 95.8 0.98 Os02g0265800 9630.m01549 - - 5e+0 At4g11393 - O.I. H.G. S.X.
0.77 93.1 0.98 Os01g0268700 9629.m01625 - - 3e+0 At2g48130 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.63 82.7 0.98 Os08g0517800 9636.m04110 - Thaumatin, pathogenesis-related family protein 6e-4 At4g38670 pathogenesis-related thaumatin family protein O.I. H.G. S.X.
0.60 79.7 0.98 Os08g0247950 9636.m01500 - - 7e-1 At1g50800 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
54.0 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
19.0 99.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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