Co-expression analysis

Gene ID Os12g0542500
Gene name
Homology with ArabidopsisSimilar to At5g63100: unknown protein (HF=1e+1)
Module size 6 genes
NF 0.78
%ile 97.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.98Os12g05425009640.m03462--1e+1At5g63100unknown proteinO.I.H.G.S.X.
0.8094.60.99Os11g0208600AK106458.1-Hypothetical protein4e+0At2g29420ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7)O.I.H.G.S.X.
0.8094.60.99Os11g07028009639.m04456--1e+0At5g64816unknown proteinO.I.H.G.S.X.
0.6787.20.98Os01g0371400NM_193841.1-Glutathione S-transferase, C-terminal domaincontaining protein5e-3At3g62760ATGSTF13O.I.H.G.S.X.
0.6787.20.98Os03g04229009631.m03030--5e+0At5g11300CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS)O.I.H.G.S.X.
0.5371.30.98Os03g0604700AK064243.1-Hypothetical protein3e-4At1g49870-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.799.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
22.199.3GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.398.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.698.6GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.698.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.398.4GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.098.4GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.398.3GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.398.3GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.898.3GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0151GO:0006952Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.Link to AmiGO
0.0121GO:0006915A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.18066.1.A1_at, orthologous to the query gene, Os12g0542500

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9499.5Zm.18066.1.A1_atAt5g63100hypothetical protein LOC100272811-3e-2At2g16860GCIP-interacting family proteinO.I.H.G.S.X.
0.6381.1Zm.3393.1.A1_atAt5g63100--1e+0At5g15530BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)O.I.H.G.S.X.
0.6279.8Zm.10972.1.A1_atAt5g63100hypothetical protein AY107822-3e-6At5g64500membrane protein-relatedO.I.H.G.S.X.
0.6077.8Zm.6448.1.A1_atAt5g63100antigenic determinant of rec-A protein-3e-18At1g55460Kin17 DNA-binding protein-relatedO.I.H.G.S.X.
0.5976.1Zm.4209.1.A1_atAt5g63100hypothetical protein LOC100191198-2e-5At5g37370ATSRL1O.I.H.G.S.X.
0.5775.1Zm.463.1.A1_atAt5g63100viviparous14-5e-6At3g14440NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)O.I.H.G.S.X.
0.5674.4Zm.17551.1.S1_atAt5g63100hypothetical protein LOC100276204-1e-1At4g28180unknown proteinO.I.H.G.S.X.
0.5674.4Zm.5616.1.A1_atAt5g63100threonine endopeptidase-2e+0At4g12270copper amine oxidase family proteinO.I.H.G.S.X.
0.5469.8Zm.6293.1.A1_atAt5g63100hypothetical protein LOC100216905-4e+0At5g08400unknown proteinO.I.H.G.S.X.
0.5369.1Zm.9570.2.A1_x_atAt5g63100--5e+0At3g22070proline-rich family proteinO.I.H.G.S.X.
0.5267.3Zm.15451.1.S1_atAt5g63100hypothetical protein LOC100192101-5e+0At2g15830unknown proteinO.I.H.G.S.X.
0.5065.7Zm.2378.1.A1_atAt5g63100--8e-10At1g70750unknown proteinO.I.H.G.S.X.
0.4759.9Zm.7941.1.A1_atAt5g63100--1e+0At3g50040unknown proteinO.I.H.G.S.X.
0.4658.4Zm.2072.1.S1_atAt5g63100--7e-1At5g14260SET domain-containing proteinO.I.H.G.S.X.
0.4658.4Zm.13581.1.A1_atAt5g63100--2e-4At5g65460kinesin motor protein-relatedO.I.H.G.S.X.
0.4658.4Zm.18816.1.A1_atAt5g63100indole-3-acetate beta-glucosyltransferase-1e+0At4g33730pathogenesis-related protein, putativeO.I.H.G.S.X.
0.4556.4Zm.3975.1.S1_atAt5g631005a2 protein-2e+1At5g20520WAV2 (WAVY GROWTH 2)O.I.H.G.S.X.
0.4556.4Zm.2749.1.A1_atAt5g63100--8e-5At3g18080BGLU44 (B-S GLUCOSIDASE 44)O.I.H.G.S.X.
0.4455.7Zm.1338.1.S1_atAt5g63100--6e+0At5g15350plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.4455.7Zm.6863.2.A1_atAt5g63100hypothetical protein LOC100193970-7e-67At1g48410AGO1 (ARGONAUTE 1)O.I.H.G.S.X.
0.4352.8Zm.14496.1.A1_atAt5g63100sesquiterpene cyclase-like-1e+0At5g46710zinc-binding family proteinO.I.H.G.S.X.
0.4149.7ZmAffx.469.1.A1_atAt5g63100--3e+0At2g45250unknown proteinO.I.H.G.S.X.
0.4048.5Zm.18259.1.A1_x_atAt5g63100B12D protein-2e+1At5g4577560S ribosomal protein L11 (RPL11D)O.I.H.G.S.X.
0.3945.6ZmAffx.1315.1.S1_atAt5g63100--2e+0At5g41080glycerophosphoryl diester phosphodiesterase family proteinO.I.H.G.S.X.
0.3844.2Zm.1305.1.S1_atAt5g63100glycine-rich RNA binding protein-1e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.3742.3Zm.2810.1.S1_atAt5g63100calcitonin peptide-receptor component protein-7e-1At1g18170immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.3742.3Zm.16810.2.A1_atAt5g63100hypothetical protein LOC100192849-2e-3At5g66560phototropic-responsive NPH3 family proteinO.I.H.G.S.X.
0.3641.3Zm.16590.1.S1_atAt5g63100pollen signalling protein with adenylyl cyclase activity-2e+0At3g46530RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13)O.I.H.G.S.X.
0.3538.9Zm.4493.1.A1_atAt5g63100hypothetical protein LOC100279480-4e-1At2g29780kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.3538.9Zm.3699.5.A1_atAt5g63100--3e-2At5g09995unknown proteinO.I.H.G.S.X.
0.3131.6Zm.14136.1.A1_atAt5g63100hypothetical protein LOC100193727-1e-21At1g27340F-box family proteinO.I.H.G.S.X.
0.3029.8ZmAffx.563.1.S1_atAt5g63100--3e+0At5g67560ATARLA1D (ADP-ribosylation factor-like A1D)O.I.H.G.S.X.
0.3029.8Zm.677.1.A1_atAt5g63100diphosphonucleotide phosphatase 2-2e-7At3g14890phosphoesteraseO.I.H.G.S.X.
0.2928.1Zm.9814.1.A1_atAt5g63100--4e+0At5g26840unknown proteinO.I.H.G.S.X.
0.2828.1Zm.10534.1.A1_x_atAt5g63100receptor protein kinase CLAVATA1-2e+0At2g36890RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)O.I.H.G.S.X.
0.2419.8Zm.15194.1.A1_atAt5g63100--4e+0At1g16025unknown proteinO.I.H.G.S.X.
0.2419.8Zm.18045.1.A1_atAt5g63100--8e-4At1g22180SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage