CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0541000

Gene name
Homology with Arabidopsis Similar to At5g54530: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.14

%ile 11.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.93 Os12g0541000 9640.m03442 - Lumazine-binding protein family protein 2e+0 At5g54530 unknown protein O.I. H.G. S.X.
0.29 31.1 0.92 Os12g0533800 AK071593.1 - Mitochondrial substrate carrier family protein 8e-1 At2g11005 glycine-rich protein O.I. H.G. S.X.
0.29 31.1 0.94 Os07g0265100 AK111251.1 - Hypothetical protein 4e+0 At2g07310 unknown protein O.I. H.G. S.X.
0.21 17.9 0.93 Os02g0558500 AK072724.1 - Conserved hypothetical protein 3e+0 At5g65480 unknown protein O.I. H.G. S.X.
0.08 4.2 0.93 Os08g0484700 CB682631 - Homeodomain-like containing protein 3e-2 At4g20290 unknown protein O.I. H.G. S.X.
0.05 2.5 0.93 Os01g0355900 AK120976.1 - Peptidase C48, SUMO/Sentrin/Ubl1 family protein 2e-8 At4g15880 ESD4 (EARLY IN SHORT DAYS 4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.1 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.4 96.8 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
5.3 96.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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