CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0520200

Gene name
Homology with Arabidopsis Similar to At3g53260: PAL2 (HF=2e-5)

Module size 6 genes

NF 0.12

%ile 9.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.89 Os12g0520200 CB675503 - Phenylalanine ammonia-lyase (EC 4.3.1.5)(Fragment) 2e-5 At3g53260 PAL2 O.I. H.G. S.X.
0.19 15.1 0.96 Os02g0764500 AK066291.1 - Lhca5 protein 8e-3 At1g45474 LHCA5 O.I. H.G. S.X.
0.19 15.1 0.95 Os05g0291700 AK108453.1 - Conserved hypothetical protein 7e-1 At1g79810 TED3 (REVERSAL OF THE DET PHENOTYPE 3) O.I. H.G. S.X.
0.13 8.2 0.95 Os06g0196300 AK059845.1 - Peroxiredoxin Q 9e-12 At3g26060 ATPRX Q O.I. H.G. S.X.
0.10 5.7 0.86 Os03g0782200 AK069119.1 - Conserved hypothetical protein 1e+1 At5g53588 CPuORF50 (Conserved peptide upstream open reading frame 50) O.I. H.G. S.X.
0.04 2.0 0.92 Os11g0595200 AK106159.1 - PAP fibrillin family protein 4e-2 At3g23400 plastid-lipid associated protein PAP / fibrillin family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
50.2 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
45.6 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
45.3 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.4 99.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.0 98.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.111 1 GO:0009765 Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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