CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0514000

Gene name
Homology with Arabidopsis Similar to At3g18830: ATPLT5 (POLYOL TRANSPORTER 5) (HF=6e-2)

Module size 7 genes

NF 0.15

%ile 12.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.84 Os12g0514000 AK099395.1 - Sugar transporter family protein 6e-2 At3g18830 ATPLT5 (POLYOL TRANSPORTER 5) O.I. H.G. S.X.
0.61 81.2 0.84 Os01g0717400 AK072165.1 - Alliinase EGF-like domain containing protein 9e-1 At5g44860 unknown protein O.I. H.G. S.X.
0.13 8.2 0.84 Os10g0421800 AK119359.1 - Protein prenyltransferase domain containingprotein 5e-1 At5g49700 DNA-binding protein-related O.I. H.G. S.X.
0.12 7.2 0.85 Os01g0227500 AK120914.1 - Cytochrome P450 family protein 2e-1 At4g33960 unknown protein O.I. H.G. S.X.
0.10 5.7 0.86 Os02g0206100 AK066593.1 - The start codon is not identified. 4e+0 At3g60550 CYCP3 O.I. H.G. S.X.
0.10 5.7 0.84 Os07g0569600 AK067599.1 - Conserved hypothetical protein 7e-12 At5g19855 unknown protein O.I. H.G. S.X.
0.10 5.7 0.88 Os01g0810100 AK071916.1 - Ribonuclease III domain containing protein 3e-22 At4g37510 ribonuclease III family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
59.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
33.0 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.1 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.045 1 GO:0006396 Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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