CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0511800

Gene name
Homology with Arabidopsis Similar to At5g43410: ethylene-responsive factor, putative (HF=1e-1)

Module size 24 genes

NF 0.24

%ile 23.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 87.9 0.77 Os12g0511800 9640.m03181 - - 1e-1 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.43 55.4 0.89 Os01g0209400 AK103702.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-17 At3g14450 CID9 (CTC-Interacting Domain 9) O.I. H.G. S.X.
0.34 40.0 0.87 Os11g0155500 9639.m00485 - Amino acid/polyamine transporter I family protein 4e-18 At5g04770 CAT6 (CATIONIC AMINO ACID TRANSPORTER 6) O.I. H.G. S.X.
0.30 32.7 0.91 Os06g0672700 AK101470.1 - Hypothetical protein 5e+0 At5g47720 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative O.I. H.G. S.X.
0.29 31.1 0.88 Os11g0267100 AK109670.1 - Hypothetical protein 9e-4 At3g59390 unknown protein O.I. H.G. S.X.
0.29 31.1 0.91 Os01g0925000 BM038361 - Protein of unknown function DUF618 domaincontaining protein 7e-2 At2g23310 ATRER1C1 O.I. H.G. S.X.
0.28 31.1 0.92 Os07g0109600 AK063942.1 - Leo1-like protein family protein 9e-5 At5g61150 VIP4 (VERNALIZATION INDEPENDENCE 4) O.I. H.G. S.X.
0.28 31.1 0.89 Os01g0764700 AK071863.1 - Holliday junction resolvase YqgF family protein 1e+1 At5g05410 DREB2A O.I. H.G. S.X.
0.27 27.5 0.90 Os09g0456700 AK108731.1 - Conserved hypothetical protein 1e+1 At5g38317 LCR58 (Low-molecular-weight cysteine-rich 58) O.I. H.G. S.X.
0.26 25.6 0.86 Os03g0113900 AK107900.1 - Protein of unknown function DUF584 family protein 4e-1 At3g18650 agl103 (AGAMOUS-LIKE 103) O.I. H.G. S.X.
0.25 24.1 0.92 Os05g0409000 AK065999.1 - Ubiquitin-associated domain containing protein 9e-5 At2g26920 ubiquitin-associated (UBA)/TS-N domain-containing protein O.I. H.G. S.X.
0.25 24.1 0.90 Os04g0421700 AK072998.1 - RmlC-like cupin family protein 5e-1 At1g19950 HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H)) O.I. H.G. S.X.
0.25 24.1 0.92 Os01g0101300 BE040171 - Conserved hypothetical protein 2e-1 At4g24880 unknown protein O.I. H.G. S.X.
0.24 22.4 0.87 Os05g0187800 D10860.1 - Der1-like domain containing protein 9e-2 At4g29330 DER1 (DERLIN-1) O.I. H.G. S.X.
0.24 22.4 0.91 Os01g0225300 CA760234 - Conserved hypothetical protein 3e-19 At5g62650 unknown protein O.I. H.G. S.X.
0.24 22.4 0.88 Os05g0430900 AK068274.1 - TGF-beta receptor, type I/II extracellular regionfamily protein 1e-3 At1g72120 transporter O.I. H.G. S.X.
0.23 21.2 0.91 Os02g0611300 AK067083.1 - Nuclear protein SET domain containing protein 5e-3 At4g30860 SDG4 (SET DOMAIN GROUP 4) O.I. H.G. S.X.
0.22 19.4 0.92 Os02g0277600 AK110791.1 - MFDR (NADP adrenodoxin-like ferredoxin reductase) 1e+0 At4g32360 NADP adrenodoxin-like ferredoxin reductase O.I. H.G. S.X.
0.22 19.4 0.89 Os01g0621300 NM_192847.1 - Conserved hypothetical protein 8e-2 At4g11740 SAY1 O.I. H.G. S.X.
0.22 19.4 0.92 Os02g0637800 AK069750.1 - Protein of unknown function DUF639 family protein 2e-2 At5g23390 unknown protein O.I. H.G. S.X.
0.21 17.9 0.83 Os08g0484200 9636.m03794 - Zn-finger, RING domain containing protein 7e-1 At2g17420 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) O.I. H.G. S.X.
0.19 15.1 0.93 Os01g0755100 AK067515.1 - Conserved hypothetical protein 4e-1 At5g56960 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.11 6.5 0.90 Os05g0403400 AK064244.1 - Mitochodrial transcription terminationfactor-related family protein 1e+1 At4g30820 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related O.I. H.G. S.X.
0.08 4.2 0.85 Os06g0620000 AK111088.1 - Conserved hypothetical protein 1e+0 At5g09820 plastid-lipid associated protein PAP / fibrillin family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.69	87.9	0.77	Os12g0511800	9640.m03181	-	-	1e-1	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.
0.43	55.4	0.89	Os01g0209400	AK103702.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	2e-17	At3g14450	CID9 (CTC-Interacting Domain 9)	O.I.	H.G.	S.X.
0.34	40.0	0.87	Os11g0155500	9639.m00485	-	Amino acid/polyamine transporter I family protein	4e-18	At5g04770	CAT6 (CATIONIC AMINO ACID TRANSPORTER 6)	O.I.	H.G.	S.X.
0.30	32.7	0.91	Os06g0672700	AK101470.1	-	Hypothetical protein	5e+0	At5g47720	acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	O.I.	H.G.	S.X.
0.29	31.1	0.88	Os11g0267100	AK109670.1	-	Hypothetical protein	9e-4	At3g59390	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.91	Os01g0925000	BM038361	-	Protein of unknown function DUF618 domaincontaining protein	7e-2	At2g23310	ATRER1C1	O.I.	H.G.	S.X.
0.28	31.1	0.92	Os07g0109600	AK063942.1	-	Leo1-like protein family protein	9e-5	At5g61150	VIP4 (VERNALIZATION INDEPENDENCE 4)	O.I.	H.G.	S.X.
0.28	31.1	0.89	Os01g0764700	AK071863.1	-	Holliday junction resolvase YqgF family protein	1e+1	At5g05410	DREB2A	O.I.	H.G.	S.X.
0.27	27.5	0.90	Os09g0456700	AK108731.1	-	Conserved hypothetical protein	1e+1	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	O.I.	H.G.	S.X.
0.26	25.6	0.86	Os03g0113900	AK107900.1	-	Protein of unknown function DUF584 family protein	4e-1	At3g18650	agl103 (AGAMOUS-LIKE 103)	O.I.	H.G.	S.X.
0.25	24.1	0.92	Os05g0409000	AK065999.1	-	Ubiquitin-associated domain containing protein	9e-5	At2g26920	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.
0.25	24.1	0.90	Os04g0421700	AK072998.1	-	RmlC-like cupin family protein	5e-1	At1g19950	HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H))	O.I.	H.G.	S.X.
0.25	24.1	0.92	Os01g0101300	BE040171	-	Conserved hypothetical protein	2e-1	At4g24880	unknown protein	O.I.	H.G.	S.X.
0.24	22.4	0.87	Os05g0187800	D10860.1	-	Der1-like domain containing protein	9e-2	At4g29330	DER1 (DERLIN-1)	O.I.	H.G.	S.X.
0.24	22.4	0.91	Os01g0225300	CA760234	-	Conserved hypothetical protein	3e-19	At5g62650	unknown protein	O.I.	H.G.	S.X.
0.24	22.4	0.88	Os05g0430900	AK068274.1	-	TGF-beta receptor, type I/II extracellular regionfamily protein	1e-3	At1g72120	transporter	O.I.	H.G.	S.X.
0.23	21.2	0.91	Os02g0611300	AK067083.1	-	Nuclear protein SET domain containing protein	5e-3	At4g30860	SDG4 (SET DOMAIN GROUP 4)	O.I.	H.G.	S.X.
0.22	19.4	0.92	Os02g0277600	AK110791.1	-	MFDR (NADP adrenodoxin-like ferredoxin reductase)	1e+0	At4g32360	NADP adrenodoxin-like ferredoxin reductase	O.I.	H.G.	S.X.
0.22	19.4	0.89	Os01g0621300	NM_192847.1	-	Conserved hypothetical protein	8e-2	At4g11740	SAY1	O.I.	H.G.	S.X.
0.22	19.4	0.92	Os02g0637800	AK069750.1	-	Protein of unknown function DUF639 family protein	2e-2	At5g23390	unknown protein	O.I.	H.G.	S.X.
0.21	17.9	0.83	Os08g0484200	9636.m03794	-	Zn-finger, RING domain containing protein	7e-1	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	O.I.	H.G.	S.X.
0.19	15.1	0.93	Os01g0755100	AK067515.1	-	Conserved hypothetical protein	4e-1	At5g56960	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.11	6.5	0.90	Os05g0403400	AK064244.1	-	Mitochodrial transcription terminationfactor-related family protein	1e+1	At4g30820	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related	O.I.	H.G.	S.X.
0.08	4.2	0.85	Os06g0620000	AK111088.1	-	Conserved hypothetical protein	1e+0	At5g09820	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.9 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.2 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.7 97.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.9 97.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM159271 Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
7.3 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
25.9	99.5	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.2	98.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.7	97.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
7.9	97.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6	97.5	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5	97.5	GSM159271	Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
7.3	97.5	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0	97.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9	97.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9	97.3	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.069 1 GO:0006139 The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.069	1	GO:0006139	The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os12g0511800
Gene name
Homology with Arabidopsis	Similar to At5g43410: ethylene-responsive factor, putative (HF=1e-1)
Module size	24 genes
NF	0.24
%ile	23.4

Co-expression analysis

Gene ID Os12g0511800 Gene name Homology with ArabidopsisSimilar to At5g43410: ethylene-responsive factor, putative (HF=1e-1) Module size 24 genes NF 0.24 %ile 23.4

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0691GO:0006139The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os12g0511800

Gene name
Homology with Arabidopsis Similar to At5g43410: ethylene-responsive factor, putative (HF=1e-1)

Module size 24 genes

NF 0.24

%ile 23.4

SF Genes GO ID Process Name Link to AmiGO
0.069 1 GO:0006139 The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays