Co-expression analysis

Gene ID Os12g0511700
Gene name
Homology with ArabidopsisSimilar to At3g03030: F-box family protein (HF=1e-1)
Module size 6 genes
NF 0.65
%ile 87.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.99Os12g05117009640.m03180--1e-1At3g03030F-box family proteinO.I.H.G.S.X.
0.8094.60.98Os03g0162300AK110675.1-Hypothetical protein4e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.7189.60.98Os04g02325009632.m01461--1e+0At1g13440GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)O.I.H.G.S.X.
0.5371.30.98Os01g0288100NM_183572.1--1e-1At1g07175unknown proteinO.I.H.G.S.X.
0.5068.00.98Os10g04582009638.m02775--1e+0At4g30370zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3846.90.98Os11g06877009639.m04295--3e+0At4g14540NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8094.60.98Os04g0257500AK107745.1-Ethylene-responsive element binding protein7e-3At1g06160ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)O.I.H.G.S.X.
0.6787.20.97Os03g07934009631.m05691--2e+0At5g55570unknown proteinO.I.H.G.S.X.
0.6181.20.98Os08g03031009636.m02060--5e-2At5g66230unknown proteinO.I.H.G.S.X.
0.6079.70.98Os01g0278100AK105195.1-Conserved hypothetical protein6e-1At5g28800unknown proteinO.I.H.G.S.X.
0.6079.70.98Os02g06614009630.m04282--3e-1At5g61230ankyrin repeat family proteinO.I.H.G.S.X.
0.5777.00.97Os04g02830009632.m01972--2e+0At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)O.I.H.G.S.X.
0.5777.00.98Os08g04184009636.m03229--7e-4At1g30475-O.I.H.G.S.X.
0.5371.30.97Os06g02800009634.m01691--1e+0At5g18748unknown proteinO.I.H.G.S.X.
0.5371.30.98Os12g01476509640.m00443--5e+0At4g27740-O.I.H.G.S.X.
0.5068.00.98Os10g03439509638.m01678--6e+0At3g16660unknown proteinO.I.H.G.S.X.
0.4660.90.98Os03g06920009631.m04726-Glycosyl transferase, family 14 protein7e-4At5g15050glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinO.I.H.G.S.X.
0.4458.10.98Os02g01009009630.m00009--5e-2At2g42410ZFP11 (ZINC FINGER PROTEIN 11)O.I.H.G.S.X.
0.4355.40.98Os04g01230009632.m00230--3e-1At1g35420dienelactone hydrolase family proteinO.I.H.G.S.X.
0.4355.40.98Os06g0706000AK070685.1-Hypothetical protein4e-1At2g02040PTR2 (PEPTIDE TRANSPORTER 2)O.I.H.G.S.X.
0.4253.90.97Os11g02605509639.m01428--7e-1At4g25130peptide methionine sulfoxide reductase, putativeO.I.H.G.S.X.
0.3846.90.98Os01g0756800NM_191290.1--1e+1At5g02280synbindin, putativeO.I.H.G.S.X.
0.3644.00.97Os12g04291009640.m02299--1e+1At4g00220JLO (JAGGED LATERAL ORGANS)O.I.H.G.S.X.
0.3644.00.98Os04g04389009632.m03451--3e-1At5g51812unknown proteinO.I.H.G.S.X.
0.3541.70.92Os08g03174009636.m02207--7e-2At3g14250protein binding / zinc ion bindingO.I.H.G.S.X.
0.3541.70.97Os12g02227009640.m01156--8e+0At3g08636unknown proteinO.I.H.G.S.X.
0.3541.70.98Os11g01872009639.m00790--2e-1At2g23320WRKY15O.I.H.G.S.X.
0.3338.80.96Os07g0533600AK109794.1-Peptidase A1, pepsin family protein2e-1At1g01300aspartyl protease family proteinO.I.H.G.S.X.
0.3338.80.98Os10g01378009638.m00394--3e-1At3g60530zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.3236.30.98Os09g03411009637.m01453-Protein kinase domain containing protein3e+0At5g10530lectin protein kinase, putativeO.I.H.G.S.X.
0.3032.70.97Os05g04110009633.m03145--5e+0At4g30097unknown proteinO.I.H.G.S.X.
0.2931.10.95Os08g01831009636.m00794--7e+0At4g13520SMAP1 (SMALL ACIDIC PROTEIN 1)O.I.H.G.S.X.
0.2931.10.96Os08g04602009636.m03597--4e-1At3g43950phosphotransferase, alcohol group as acceptorO.I.H.G.S.X.
0.2931.10.96Os12g04949009640.m03004--9e+0At4g37550formamidase, putative / formamide amidohydrolase, putativeO.I.H.G.S.X.
0.2831.10.96Os06g05574009634.m03444-Leucine-rich repeat, typical subtype containingprotein5e-2At3g53560chloroplast lumen common family proteinO.I.H.G.S.X.
0.2831.10.96Os06g0589900AK062501.1-Conserved hypothetical protein3e-4At2g48010RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)O.I.H.G.S.X.
0.2831.10.97Os01g0148600NM_184365.1--2e+0At4g39260GR-RBP8O.I.H.G.S.X.
0.2727.50.96Os06g0324800AK109109.1-Major facilitator superfamily protein6e-1At2g30560glycine-rich proteinO.I.H.G.S.X.
0.2727.50.98Os07g01399009635.m00404--3e-1At2g36010E2F3 (E2F TRANSCRIPTION FACTOR 3)O.I.H.G.S.X.
0.2727.50.98Os01g0256300NM_187911.1-Protein kinase-like domain containing protein8e-1At5g55570unknown proteinO.I.H.G.S.X.
0.2727.50.98Os04g01314009632.m00329--8e-1At5g64810WRKY51O.I.H.G.S.X.
0.2625.60.93Os05g03822009633.m02899-Na+/H+ exchangeing protein-like2e-1At4g23700ATCHX17 (CATION/H+ EXCHANGER 17)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
116.1100.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
32.999.8GSM255763antiOsLIC collar chipGSE12097antiOsLIC collar chipLink to GEO
24.699.4GSM255762wt collar chipGSE12097antiOsLIC collar chipLink to GEO
11.698.2GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.398.1GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.098.0GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.497.9GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.297.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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