CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0511700

Gene name
Homology with Arabidopsis Similar to At3g03030: F-box family protein (HF=1e-1)

Module size 6 genes

NF 0.65

%ile 87.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os12g0511700 9640.m03180 - - 1e-1 At3g03030 F-box family protein O.I. H.G. S.X.
0.80 94.6 0.98 Os03g0162300 AK110675.1 - Hypothetical protein 4e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.71 89.6 0.98 Os04g0232500 9632.m01461 - - 1e+0 At1g13440 GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) O.I. H.G. S.X.
0.53 71.3 0.98 Os01g0288100 NM_183572.1 - - 1e-1 At1g07175 unknown protein O.I. H.G. S.X.
0.50 68.0 0.98 Os10g0458200 9638.m02775 - - 1e+0 At4g30370 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.38 46.9 0.98 Os11g0687700 9639.m04295 - - 3e+0 At4g14540 NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.99	Os12g0511700	9640.m03180	-	-	1e-1	At3g03030	F-box family protein	O.I.	H.G.	S.X.
0.80	94.6	0.98	Os03g0162300	AK110675.1	-	Hypothetical protein	4e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.
0.71	89.6	0.98	Os04g0232500	9632.m01461	-	-	1e+0	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	O.I.	H.G.	S.X.
0.53	71.3	0.98	Os01g0288100	NM_183572.1	-	-	1e-1	At1g07175	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os10g0458200	9638.m02775	-	-	1e+0	At4g30370	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.38	46.9	0.98	Os11g0687700	9639.m04295	-	-	3e+0	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	94.6	0.98	Os04g0257500	AK107745.1	-	Ethylene-responsive element binding protein	7e-3	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	O.I.	H.G.	S.X.
0.67	87.2	0.97	Os03g0793400	9631.m05691	-	-	2e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.
0.61	81.2	0.98	Os08g0303100	9636.m02060	-	-	5e-2	At5g66230	unknown protein	O.I.	H.G.	S.X.
0.60	79.7	0.98	Os01g0278100	AK105195.1	-	Conserved hypothetical protein	6e-1	At5g28800	unknown protein	O.I.	H.G.	S.X.
0.60	79.7	0.98	Os02g0661400	9630.m04282	-	-	3e-1	At5g61230	ankyrin repeat family protein	O.I.	H.G.	S.X.
0.57	77.0	0.97	Os04g0283000	9632.m01972	-	-	2e+0	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	O.I.	H.G.	S.X.
0.57	77.0	0.98	Os08g0418400	9636.m03229	-	-	7e-4	At1g30475	-	O.I.	H.G.	S.X.
0.53	71.3	0.97	Os06g0280000	9634.m01691	-	-	1e+0	At5g18748	unknown protein	O.I.	H.G.	S.X.
0.53	71.3	0.98	Os12g0147650	9640.m00443	-	-	5e+0	At4g27740	-	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os10g0343950	9638.m01678	-	-	6e+0	At3g16660	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.98	Os03g0692000	9631.m04726	-	Glycosyl transferase, family 14 protein	7e-4	At5g15050	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.
0.44	58.1	0.98	Os02g0100900	9630.m00009	-	-	5e-2	At2g42410	ZFP11 (ZINC FINGER PROTEIN 11)	O.I.	H.G.	S.X.
0.43	55.4	0.98	Os04g0123000	9632.m00230	-	-	3e-1	At1g35420	dienelactone hydrolase family protein	O.I.	H.G.	S.X.
0.43	55.4	0.98	Os06g0706000	AK070685.1	-	Hypothetical protein	4e-1	At2g02040	PTR2 (PEPTIDE TRANSPORTER 2)	O.I.	H.G.	S.X.
0.42	53.9	0.97	Os11g0260550	9639.m01428	-	-	7e-1	At4g25130	peptide methionine sulfoxide reductase, putative	O.I.	H.G.	S.X.
0.38	46.9	0.98	Os01g0756800	NM_191290.1	-	-	1e+1	At5g02280	synbindin, putative	O.I.	H.G.	S.X.
0.36	44.0	0.97	Os12g0429100	9640.m02299	-	-	1e+1	At4g00220	JLO (JAGGED LATERAL ORGANS)	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os04g0438900	9632.m03451	-	-	3e-1	At5g51812	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.92	Os08g0317400	9636.m02207	-	-	7e-2	At3g14250	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.35	41.7	0.97	Os12g0222700	9640.m01156	-	-	8e+0	At3g08636	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.98	Os11g0187200	9639.m00790	-	-	2e-1	At2g23320	WRKY15	O.I.	H.G.	S.X.
0.33	38.8	0.96	Os07g0533600	AK109794.1	-	Peptidase A1, pepsin family protein	2e-1	At1g01300	aspartyl protease family protein	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os10g0137800	9638.m00394	-	-	3e-1	At3g60530	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.32	36.3	0.98	Os09g0341100	9637.m01453	-	Protein kinase domain containing protein	3e+0	At5g10530	lectin protein kinase, putative	O.I.	H.G.	S.X.
0.30	32.7	0.97	Os05g0411000	9633.m03145	-	-	5e+0	At4g30097	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.95	Os08g0183100	9636.m00794	-	-	7e+0	At4g13520	SMAP1 (SMALL ACIDIC PROTEIN 1)	O.I.	H.G.	S.X.
0.29	31.1	0.96	Os08g0460200	9636.m03597	-	-	4e-1	At3g43950	phosphotransferase, alcohol group as acceptor	O.I.	H.G.	S.X.
0.29	31.1	0.96	Os12g0494900	9640.m03004	-	-	9e+0	At4g37550	formamidase, putative / formamide amidohydrolase, putative	O.I.	H.G.	S.X.
0.28	31.1	0.96	Os06g0557400	9634.m03444	-	Leucine-rich repeat, typical subtype containingprotein	5e-2	At3g53560	chloroplast lumen common family protein	O.I.	H.G.	S.X.
0.28	31.1	0.96	Os06g0589900	AK062501.1	-	Conserved hypothetical protein	3e-4	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	O.I.	H.G.	S.X.
0.28	31.1	0.97	Os01g0148600	NM_184365.1	-	-	2e+0	At4g39260	GR-RBP8	O.I.	H.G.	S.X.
0.27	27.5	0.96	Os06g0324800	AK109109.1	-	Major facilitator superfamily protein	6e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.
0.27	27.5	0.98	Os07g0139900	9635.m00404	-	-	3e-1	At2g36010	E2F3 (E2F TRANSCRIPTION FACTOR 3)	O.I.	H.G.	S.X.
0.27	27.5	0.98	Os01g0256300	NM_187911.1	-	Protein kinase-like domain containing protein	8e-1	At5g55570	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.98	Os04g0131400	9632.m00329	-	-	8e-1	At5g64810	WRKY51	O.I.	H.G.	S.X.
0.26	25.6	0.93	Os05g0382200	9633.m02899	-	Na+/H+ exchangeing protein-like	2e-1	At4g23700	ATCHX17 (CATION/H+ EXCHANGER 17)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
116.1 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
32.9 99.8 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
24.6 99.4 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
11.6 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
116.1	100.0	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
32.9	99.8	GSM255763	antiOsLIC collar chip	GSE12097	antiOsLIC collar chip
24.6	99.4	GSM255762	wt collar chip	GSE12097	antiOsLIC collar chip
11.6	98.2	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6	97.8	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5	97.7	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2	97.7	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os12g0511700
Gene name
Homology with Arabidopsis	Similar to At3g03030: F-box family protein (HF=1e-1)
Module size	6 genes
NF	0.65
%ile	87.7

Co-expression analysis

Gene ID Os12g0511700 Gene name Homology with ArabidopsisSimilar to At3g03030: F-box family protein (HF=1e-1) Module size 6 genes NF 0.65 %ile 87.7

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os12g0511700

Gene name
Homology with Arabidopsis Similar to At3g03030: F-box family protein (HF=1e-1)

Module size 6 genes

NF 0.65

%ile 87.7

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays