Co-expression analysis

Gene ID Os12g0511700
Gene name
Homology with ArabidopsisSimilar to At3g03030: F-box family protein (HF=1e-1)
Module size 6 genes
NF 0.65
%ile 87.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.99Os12g05117009640.m03180--1e-1At3g03030F-box family proteinO.I.H.G.S.X.
0.8094.60.98Os03g0162300AK110675.1-Hypothetical protein4e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.7189.60.98Os04g02325009632.m01461--1e+0At1g13440GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)O.I.H.G.S.X.
0.5371.30.98Os01g0288100NM_183572.1--1e-1At1g07175unknown proteinO.I.H.G.S.X.
0.5068.00.98Os10g04582009638.m02775--1e+0At4g30370zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3846.90.98Os11g06877009639.m04295--3e+0At4g14540NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
116.1100.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
32.999.8GSM255763antiOsLIC collar chipGSE12097antiOsLIC collar chipLink to GEO
24.699.4GSM255762wt collar chipGSE12097antiOsLIC collar chipLink to GEO
11.698.2GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.398.1GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.098.0GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.497.9GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.297.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.1430.1.S1_at, orthologous to the query gene, Os12g0511700

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8996.8ZmAffx.1430.1.S1_atAt3g03030--3e-57Atcg00160-O.I.H.G.S.X.
0.9499.5ZmAffx.1437.1.S1_atAt3g03030--2e-53Atcg00050-O.I.H.G.S.X.
0.9097.0ZmAffx.1450.1.S1_atAt3g03030--0Atmg00290-O.I.H.G.S.X.
0.8896.7Zm.5076.1.A1_atAt3g03030hypothetical protein LOC100193426-6e+0At5g03170FLA11O.I.H.G.S.X.
0.8696.3ZmAffx.144.1.A1_atAt3g03030--8e-1At3g57390AGL18O.I.H.G.S.X.
0.8595.9ZmAffx.1492.1.S1_atAt3g03030--2e-31Atcg00710-O.I.H.G.S.X.
0.8595.9ZmAffx.1441.1.S1_atAt3g03030--0Atcg00270-O.I.H.G.S.X.
0.8395.6ZmAffx.1438.1.S1_atAt3g03030--7e-18Atcg00070-O.I.H.G.S.X.
0.8194.3ZmAffx.1416.1.S1_atAt3g03030--3e-1At3g21860ASK10 (ARABIDOPSIS SKP1-LIKE 10)O.I.H.G.S.X.
0.8094.0ZmAffx.180.1.A1_atAt3g03030--8e-1At1g17235RTFL11 (ROTUNDIFOLIA LIKE 11)O.I.H.G.S.X.
0.7992.8ZmAffx.1418.1.S1_atAt3g03030--9e-78Atmg00960-O.I.H.G.S.X.
0.7892.5Zm.1059.2.A1_a_atAt3g03030ATOZI1-2e-7At4g00860ATOZI1O.I.H.G.S.X.
0.7892.5ZmAffx.1451.1.S1_atAt3g03030--1e+1At5g41590unknown proteinO.I.H.G.S.X.
0.7892.5ZmAffx.1431.1.S1_atAt3g03030--0Atcg00150-O.I.H.G.S.X.
0.7792.1ZmAffx.1432.1.S1_atAt3g03030ATPase III subunit-1e-75Atcg00140-O.I.H.G.S.X.
0.7792.1Zm.4648.1.S1_atAt3g03030hypothetical protein LOC100277951-2e+0At4g12940unknown proteinO.I.H.G.S.X.
0.7590.8ZmAffx.1433.1.S1_atAt3g03030ATP synthase B chain-7e-45Atcg00130-O.I.H.G.S.X.
0.7590.8ZmAffx.158.1.S1_atAt3g03030--3e-1At2g23400dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putativeO.I.H.G.S.X.
0.7490.3ZmAffx.1337.1.S1_atAt3g03030--6e-94Atcg01050-O.I.H.G.S.X.
0.7490.3ZmAffx.1346.1.S1_atAt3g03030--5e-21Atmg00160-O.I.H.G.S.X.
0.7389.9ZmAffx.1344.1.S1_atAt3g03030--9e+0Atmg00550-O.I.H.G.S.X.
0.7389.9ZmAffx.1534.1.S1_atAt3g03030--9e+0At5g52730heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.7288.6ZmAffx.1495.1.S1_atAt3g03030--3e+0At4g10160zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.7087.0ZmAffx.537.1.S1_atAt3g03030--3e+0At5g47610zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6986.5ZmAffx.159.1.S1_atAt3g03030--1e+1At5g48680sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.6986.5ZmAffx.1386.1.S1_atAt3g03030--7e-1At3g21920pollen coat receptor kinase, putativeO.I.H.G.S.X.
0.6886.1ZmAffx.1161.1.S1_atAt3g03030--5e-2At5g51010rubredoxin family proteinO.I.H.G.S.X.
0.6785.8ZmAffx.1338.1.S1_atAt3g03030--7e-71Atcg01060-O.I.H.G.S.X.
0.6785.8ZmAffx.1161.1.A1_atAt3g03030CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase-5e-2At5g51010rubredoxin family proteinO.I.H.G.S.X.
0.6682.3ZmAffx.1411.1.S1_atAt3g03030--2e-133Atmg00980-O.I.H.G.S.X.
0.6582.1ZmAffx.1448.1.S1_atAt3g03030--7e-1At4g37730AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)O.I.H.G.S.X.
0.6381.1ZmAffx.1449.1.S1_atAt3g03030--1e+0At3g32090transcription factor-relatedO.I.H.G.S.X.
0.5976.1ZmAffx.1422.1.S1_atAt3g03030--3e+0At3g06180structural constituent of ribosomeO.I.H.G.S.X.
0.5571.6ZmAffx.159.1.A1_atAt3g03030--1e+1At5g48680sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage