Co-expression analysis

Gene ID Os12g0511700
Gene name
Homology with ArabidopsisSimilar to At3g03030: F-box family protein (HF=1e-1)
Module size 6 genes
NF 0.65
%ile 87.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.99Os12g05117009640.m03180--1e-1At3g03030F-box family proteinO.I.H.G.S.X.
0.8094.60.98Os03g0162300AK110675.1-Hypothetical protein4e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.7189.60.98Os04g02325009632.m01461--1e+0At1g13440GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)O.I.H.G.S.X.
0.5371.30.98Os01g0288100NM_183572.1--1e-1At1g07175unknown proteinO.I.H.G.S.X.
0.5068.00.98Os10g04582009638.m02775--1e+0At4g30370zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3846.90.98Os11g06877009639.m04295--3e+0At4g14540NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
116.1100.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
32.999.8GSM255763antiOsLIC collar chipGSE12097antiOsLIC collar chipLink to GEO
24.699.4GSM255762wt collar chipGSE12097antiOsLIC collar chipLink to GEO
11.698.2GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.398.1GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.098.0GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.497.9GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.297.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.201259.1.S1_at, orthologous to the query gene, Os12g0511700

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9499.6PtpAffx.201259.1.S1_atAt3g03030hypothetical protein-3e-6At3g20440alpha-amylase/ catalytic/ cation bindingO.I.H.G.S.X.
0.3357.5Ptp.4301.1.S1_s_atAt3g03030--6e-4At2g22080unknown proteinO.I.H.G.S.X.
0.3357.5PtpAffx.36300.1.S1_s_atAt3g03030histidine kinase cytokinin receptor-5e-50At1g27320AHK3 (ARABIDOPSIS HISTIDINE KINASE 3)O.I.H.G.S.X.
0.3357.5PtpAffx.216633.1.S1_x_atAt3g03030hypothetical protein-8e-19At2g44440emsy N terminus domain-containing protein / ENT domain-containing proteinO.I.H.G.S.X.
0.3255.2PtpAffx.159087.1.S1_atAt3g03030hypothetical protein-2e-21At2g34040apoptosis inhibitory 5 (API5) family proteinO.I.H.G.S.X.
0.3255.2PtpAffx.208001.1.S1_x_atAt3g03030hypothetical protein-1e-11At1g25540PFT1 (PHYTOCHROME AND FLOWERING TIME 1)O.I.H.G.S.X.
0.3153.7PtpAffx.2134.2.A1_s_atAt3g03030hypothetical protein-1e-13At5g59830unknown proteinO.I.H.G.S.X.
0.3153.7PtpAffx.213611.1.S1_atAt3g03030hypothetical protein-2e-1At3g09030potassium channel tetramerisation domain-containing proteinO.I.H.G.S.X.
0.3052.0PtpAffx.86724.1.S1_atAt3g03030hypothetical protein-1e+0At5g11416unknown proteinO.I.H.G.S.X.
0.3052.0Ptp.7984.1.S1_s_atAt3g03030hypothetical protein-1e-6At5g35410SOS2 (SALT OVERLY SENSITIVE 2)O.I.H.G.S.X.
0.2950.5PtpAffx.200593.1.S1_atAt3g03030amidase family protein-4e-12At5g09420ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V)O.I.H.G.S.X.
0.2950.5PtpAffx.126460.1.S1_s_atAt3g03030hypothetical protein-3e-12At4g18120AML3 (ARABIDOPSIS MEI2-LIKE 3)O.I.H.G.S.X.
0.2747.1PtpAffx.341.1.S1_atAt3g03030--5e-9At5g46840RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2747.1Ptp.7100.1.A1_s_atAt3g03030hypothetical protein-1e-10At3g63010GID1B (GA INSENSITIVE DWARF1B)O.I.H.G.S.X.
0.2747.1PtpAffx.91461.1.A1_s_atAt3g03030hypothetical protein-1e-7At3g15180proteasome-relatedO.I.H.G.S.X.
0.2645.2PtpAffx.127773.1.A1_atAt3g03030hypothetical protein-2e+0At3g23167LCR39 (Low-molecular-weight cysteine-rich 39)O.I.H.G.S.X.
0.2543.6Ptp.4742.2.S1_a_atAt3g03030hypothetical protein-7e-3At1g32030DNA bindingO.I.H.G.S.X.
0.2441.8PtpAffx.88561.2.A1_s_atAt3g03030hypothetical protein-2e+0At1g32370TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)O.I.H.G.S.X.
0.2441.8PtpAffx.81157.1.S1_atAt3g03030hypothetical protein-2e-39At4g21450vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.2340.5PtpAffx.140101.1.S1_atAt3g03030hypothetical protein-5e-15At1g03910-O.I.H.G.S.X.
0.2340.5PtpAffx.219218.1.S1_s_atAt3g03030hypothetical protein-3e+0At4g30450glycine-rich proteinO.I.H.G.S.X.
0.2340.5PtpAffx.208559.1.S1_atAt3g03030hypothetical protein-1e-40At2g39090tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.
0.2238.3PtpAffx.36257.1.S1_atAt3g03030f-box family protein-8e-1At4g02860catalyticO.I.H.G.S.X.
0.2238.3PtpAffx.146199.2.S1_s_atAt3g03030hypothetical protein-2e-18At2g16860GCIP-interacting family proteinO.I.H.G.S.X.
0.2238.3PtpAffx.208975.1.S1_atAt3g03030NAC domain protein, IPR003441-2e-17At1g25580ANAC008 (Arabidopsis NAC domain containing protein 8)O.I.H.G.S.X.
0.2136.5PtpAffx.204462.1.S1_s_atAt3g03030hypothetical protein-1e+0At1g50080unknown proteinO.I.H.G.S.X.
0.2136.5Ptp.1074.2.S1_a_atAt3g03030hypothetical protein-2e-45At5g57190PSD2 (phosphatidylserine decarboxylase 2)O.I.H.G.S.X.
0.2034.6PtpAffx.221153.1.S1_atAt3g03030hypothetical protein-2e-3At1g47310unknown proteinO.I.H.G.S.X.
0.2034.6PtpAffx.205031.1.S1_atAt3g03030hypothetical protein-4e-9At5g21160La domain-containing protein / proline-rich family proteinO.I.H.G.S.X.
0.2034.6PtpAffx.69782.1.S1_atAt3g03030hypothetical protein-8e-4At5g08440unknown proteinO.I.H.G.S.X.
0.1932.7PtpAffx.249.636.S1_atAt3g03030hypothetical protein-5e+0At5g28380pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.1932.7PtpAffx.206571.1.S1_atAt3g03030hypothetical protein-1e+0At5g59230transcription factor-relatedO.I.H.G.S.X.
0.1932.7PtpAffx.114487.1.A1_a_atAt3g03030--2e+0At2g21350RNA bindingO.I.H.G.S.X.
0.1830.8PtpAffx.209115.1.S1_atAt3g03030hypothetical protein-3e-1At5g37870seven in absentia (SINA) family proteinO.I.H.G.S.X.
0.1729.1PtpAffx.206627.1.S1_atAt3g03030hypothetical protein-1e-2At2g26267unknown proteinO.I.H.G.S.X.
0.1729.1PtpAffx.96831.1.S1_s_atAt3g03030hypothetical protein-3e-1At2g47210myb family transcription factorO.I.H.G.S.X.
0.1729.1PtpAffx.86518.1.S1_atAt3g03030hypothetical protein-2e-8At4g03080kelch repeat-containing serine/threonine phosphoesterase family proteinO.I.H.G.S.X.
0.1626.9PtpAffx.93040.1.S1_atAt3g03030hypothetical protein-2e+0At5g08550ILP1 (increased level of polyploidy1-1D)O.I.H.G.S.X.
0.1525.3PtpAffx.134577.1.A1_atAt3g03030--3e+0At5g02120OHP (ONE HELIX PROTEIN)O.I.H.G.S.X.
0.1423.5Ptp.2489.1.A1_atAt3g03030hypothetical protein-2e-22At2g32080PUR ALPHA-1O.I.H.G.S.X.
0.1423.5PtpAffx.201974.1.S1_s_atAt3g03030hypothetical protein-3e-47At4g24400CIPK8 (CBL-INTERACTING PROTEIN KINASE 8)O.I.H.G.S.X.
0.1219.6PtpAffx.215528.1.S1_atAt3g03030hypothetical protein-3e-52At1g28420HB-1 (homeobox-1)O.I.H.G.S.X.
0.1016.3PtpAffx.211359.1.S1_atAt3g03030hypothetical protein-1e-14At3g51620-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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