CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0499200

Gene name
Homology with Arabidopsis Similar to At5g19260: unknown protein (HF=3e-3)

Module size 6 genes

NF 0.47

%ile 61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.74 Os12g0499200 9640.m03053 - Hypothetical protein 3e-3 At5g19260 unknown protein O.I. H.G. S.X.
0.47 62.3 0.77 Os11g0272500 9639.m01589 - - 6e+0 At5g67110 ALC (ALCATRAZ) O.I. H.G. S.X.
0.46 60.9 0.78 Os04g0371800 9632.m02876 - - 2e+0 At2g43371 unknown protein O.I. H.G. S.X.
0.42 53.9 0.75 Os04g0648400 9632.m05398 - Leucine-rich repeat, typical subtype containingprotein 1e+0 At5g41050 unknown protein O.I. H.G. S.X.
0.40 51.1 0.77 Os11g0224900 9639.m01122 - NBS-LRR-like protein 2e+0 At1g33940 - O.I. H.G. S.X.
0.40 51.1 0.84 Os11g0597700 AK067694.1 - Hypothetical protein 2e-2 At2g02290 NLI interacting factor (NIF) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
96.6 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.6 98.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
15.6 98.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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