CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0485300

Gene name
Homology with Arabidopsis Similar to At4g13850: GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) (HF=3e-1)

Module size 6 genes

NF 0.03

%ile 2.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.80 Os12g0485300 AK064188.1 - Hypothetical protein 3e-1 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) O.I. H.G. S.X.
0.25 24.1 0.91 Os07g0287100 AK066004.1 - TPR-like domain containing protein 8e-5 At1g78915 binding O.I. H.G. S.X.
0.10 5.7 0.91 Os09g0515400 AK103734.1 - Conserved hypothetical protein 2e+0 At1g80700 unknown protein O.I. H.G. S.X.
0.04 2.0 0.91 Os06g0103600 AK072800.1 - Aminoacyl-t-RNA synthetase precursor 8e-46 At3g48110 EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1) O.I. H.G. S.X.
0.04 2.0 0.84 Os05g0193800 AK067940.1 - Conserved hypothetical protein 2e+0 At1g70120 unknown protein O.I. H.G. S.X.
0.01 0.5 0.86 Os05g0544900 AK109267.1 - Hypothetical protein 5e-1 At4g23770 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
54.9 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.6 99.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.9 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0006420 The process of coupling arginine to arginyl-tRNA, catalyzed by arginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
0.250 1 GO:0006426 The process of coupling glycine to glycyl-tRNA, catalyzed by glycyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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