CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0484700

Gene name
Homology with Arabidopsis Similar to At4g27745: - (HF=3e-5)

Module size 8 genes

NF 0.25

%ile 24.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 0.95 Os12g0484700 AK121352.1 - Yippee-like protein family protein 3e-5 At4g27745 - O.I. H.G. S.X.
0.44 58.1 0.95 Os07g0626300 AK100052.1 - Conserved hypothetical protein 4e-3 At1g77890 unknown protein O.I. H.G. S.X.
0.33 38.8 0.96 Os03g0765100 AK062731.1 - Conserved hypothetical protein 2e+0 At4g22105 SCRL26 (SCR-Like 26) O.I. H.G. S.X.
0.32 36.3 0.96 Os05g0274300 AK071399.1 - Conserved hypothetical protein 2e-1 At4g32260 ATP synthase family O.I. H.G. S.X.
0.24 22.4 0.95 Os02g0201000 AK064792.1 - Conserved hypothetical protein 7e-2 At5g25360 unknown protein O.I. H.G. S.X.
0.24 22.4 0.96 Os03g0120300 AK066854.1 - THH1 5e-14 At1g14530 THH1 (TOM THREE HOMOLOG 1) O.I. H.G. S.X.
0.18 13.7 0.95 Os02g0805600 AK099516.1 - Quinone oxidoreductase 2e-1 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.
0.15 10.3 0.95 Os10g0455900 AK072120.1 - Protein of unknown function DUF1336 domaincontaining protein 7e-21 At5g45560 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.1 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.4 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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