CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0458900

Gene name
Homology with Arabidopsis Similar to At5g48860: unknown protein (HF=1e+0)

Module size 6 genes

NF 0.39

%ile 46.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 0.84 Os12g0458900 AK062722.1 - Hypothetical protein 1e+0 At5g48860 unknown protein O.I. H.G. S.X.
0.55 73.7 0.86 Os11g0251400 AK063436.1 - Ankyrin repeat containing protein 3e-3 At2g42410 ZFP11 (ZINC FINGER PROTEIN 11) O.I. H.G. S.X.
0.43 55.4 0.86 Os08g0396200 AK121111.1 - Hypothetical protein 1e+0 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) O.I. H.G. S.X.
0.38 46.9 0.86 Os09g0428500 AK060993.1 - Conserved hypothetical protein 2e+0 At1g13380 unknown protein O.I. H.G. S.X.
0.30 32.7 0.85 Os03g0575500 AK062576.1 - Conserved hypothetical protein 2e+0 At3g50250 unknown protein O.I. H.G. S.X.
0.26 25.6 0.86 Os08g0491600 9636.m03866 - - 1e+0 At4g13800 permease-related O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
63.2 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
33.4 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.2 98.3 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.1 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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