CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0455000

Gene name
Homology with Arabidopsis Similar to At4g09450: myb family transcription factor (HF=1e+0)

Module size 6 genes

NF 0.67

%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.85 Os12g0455000 AK111239.1 - Conserved hypothetical protein 1e+0 At4g09450 myb family transcription factor O.I. H.G. S.X.
0.80 94.6 0.85 Os10g0334500 NM_195796.1 - Conserved hypothetical protein 2e-2 At1g07700 thioredoxin family protein O.I. H.G. S.X.
0.73 91.1 0.90 Os07g0174900 9635.m00735 - Plant lipid transfer protein/Par allergen familyprotein 5e+0 At5g26890 unknown protein O.I. H.G. S.X.
0.67 87.2 0.89 Os01g0127000 AK105526.1 - Multicopper oxidase, type 1 domain containingprotein 4e+0 At5g02270 ATNAP9 O.I. H.G. S.X.
0.55 73.7 0.87 Os06g0169900 CB096301 - Hypothetical protein 5e-1 At5g14320 30S ribosomal protein S13, chloroplast (CS13) O.I. H.G. S.X.
0.50 68.0 0.89 Os02g0791400 AK062787.1 - Cytochrome oxidase c, subunit VIb family protein 6e+0 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
37.2 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.8 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.1 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.053 1 GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.205954.1.S1_at, orthologous to the query gene, Os12g0455000

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.36 61.6 PtpAffx.205954.1.S1_at At4g09450 hypothetical protein - 6e+0 At1g63970 ISPF O.I. H.G. S.X.
0.12 19.6 PtpAffx.203207.1.S1_at At4g09450 hypothetical protein - 2e-1 At5g60553 - O.I. H.G. S.X.
0.08 12.9 PtpAffx.204610.1.S1_s_at At4g09450 hypothetical protein - 4e-7 At3g52400 SYP122 (SYNTAXIN OF PLANTS 122) O.I. H.G. S.X.
0.04 6.9 PtpAffx.215299.1.S1_at At4g09450 hypothetical protein - 1e-1 At1g15790 unknown protein O.I. H.G. S.X.
0.02 3.6 PtpAffx.207041.1.S1_s_at At4g09450 hypothetical protein - 2e-1 At2g44735 - O.I. H.G. S.X.
0.01 2.2 PtpAffx.86844.1.A1_at At4g09450 - - 5e+0 At4g30820 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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