CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0420200

Gene name
Homology with Arabidopsis Similar to At1g31250: proline-rich family protein (HF=1e+0)

Module size 7 genes

NF 0.83

%ile 98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.98 Os12g0420200 CB652532 - 38 kDa ribosome-associated protein 1e+0 At1g31250 proline-rich family protein O.I. H.G. S.X.
0.86 96.4 0.97 Os08g0162600 AK060121.1 - Rubredoxin-type Fe(Cys)4 protein family protein 6e-22 At5g17170 ENH1 (enhancer of sos3-1) O.I. H.G. S.X.
0.80 94.6 0.97 Os08g0553800 AK065711.1 - Isoflavone reductase family protein 1e-25 At4g35250 vestitone reductase-related O.I. H.G. S.X.
0.80 94.6 0.97 Os01g0912700 AK068528.1 - Conserved hypothetical protein 1e-1 At2g01340 unknown protein O.I. H.G. S.X.
0.75 91.9 0.97 Os02g0764500 AK066291.1 - Lhca5 protein 8e-3 At1g45474 LHCA5 O.I. H.G. S.X.
0.73 91.1 0.97 Os03g0311300 AK073167.1 - The start codon is not identified. 1e-27 At1g56500 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.71 89.6 0.97 Os07g0171100 AK066475.1 - TPR-like domain containing protein 2e-16 At1g55480 binding / protein binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.6 99.8 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
21.8 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.5 99.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.5 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.6 98.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.5 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.121 2 GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
0.105 1 GO:0009765 Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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