CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0412200

Gene name
Homology with Arabidopsis Similar to At3g57670: NTT (NO TRANSMITTING TRACT) (HF=3e-1)

Module size 6 genes

NF 0.48

%ile 62.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os12g0412200 9640.m02115 - - 3e-1 At3g57670 NTT (NO TRANSMITTING TRACT) O.I. H.G. S.X.
0.46 60.9 1.00 Os07g0586400 NM_187020.1 - - 1e+0 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.46 60.9 1.00 Os01g0885500 AK064424.1 - Conserved hypothetical protein 4e+0 At5g53742 - O.I. H.G. S.X.
0.39 48.3 1.00 Os10g0434600 9638.m02552 - - 2e+0 At5g64850 unknown protein O.I. H.G. S.X.
0.36 44.0 1.00 Os02g0288700 9630.m01771 - ABC transporter related domain containing protein 9e-15 At3g13100 ATMRP7 O.I. H.G. S.X.
0.30 32.7 1.00 Os02g0657500 9637.m02348 - - 4e-1 At4g18580 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.6 98.8 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
16.0 98.7 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
13.0 98.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.3 98.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
9.7 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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