CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0299300

Gene name
Homology with Arabidopsis Similar to At3g50580: unknown protein (HF=2e-1)

Module size 26 genes

NF 0.15

%ile 13.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.89 96.9 0.84 Os12g0299300 CA753251 - - 2e-1 At3g50580 unknown protein O.I. H.G. S.X.
0.36 44.0 0.92 Os01g0386700 AK067913.1 - Serine/threonine-protein kinase PBS1 (EC 2.7.1.37)(AvrPphB susceptible protein 1) 2e-1 At2g11005 glycine-rich protein O.I. H.G. S.X.
0.34 40.0 0.93 Os11g0102500 AK068187.1 - Nuclear receptor binding factor-like protein 5e-5 At3g45770 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.
0.29 31.1 0.93 Os02g0224900 AK101829.1 - Conserved hypothetical protein 2e+0 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) O.I. H.G. S.X.
0.24 22.4 0.93 Os09g0134400 AK069256.1 - Hypothetical protein 1e-1 At5g41600 BTI3 (VIRB2-INTERACTING PROTEIN 3) O.I. H.G. S.X.
0.23 21.2 0.93 Os03g0687200 AK067324.1 - Hypothetical protein 2e-1 At1g67035 unknown protein O.I. H.G. S.X.
0.23 21.2 0.93 Os09g0120800 AK066284.1 - Potential phospholipid-transporting ATPase 2 (EC3.6.3.1) (Aminophospholipid flippase 2) 2e-5 At3g04120 GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) O.I. H.G. S.X.
0.21 17.9 0.88 Os03g0789800 AK120138.1 - Hypothetical protein 7e+0 At5g38080 unknown protein O.I. H.G. S.X.
0.19 15.1 0.93 Os07g0516500 AK061672.1 - Hypothetical protein 1e-1 At2g43760 molybdopterin biosynthesis MoaE family protein O.I. H.G. S.X.
0.19 15.1 0.91 Os01g0869000 AK067351.1 - Protein of unknown function DUF639 family protein 1e+0 At5g14690 unknown protein O.I. H.G. S.X.
0.19 15.1 0.93 Os07g0472200 AK061509.1 - Zn-finger, LSD1 type domain containing protein 3e+0 At4g14830 unknown protein O.I. H.G. S.X.
0.18 13.7 0.89 Os03g0157800 AK067375.1 - 3'-5' exonuclease domain containing protein 1e-25 At5g35910 3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein O.I. H.G. S.X.
0.17 12.6 0.87 Os09g0449600 AK065937.1 - Aconitase (EC 4.2.1.3) 3e-5 At2g05710 aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative O.I. H.G. S.X.
0.16 11.3 0.94 Os06g0239000 AK071932.1 - Glucose inhibited division protein family protein 3e-3 At2g23310 ATRER1C1 O.I. H.G. S.X.
0.16 11.3 0.90 Os04g0226400 AK120419.1 - Hypothetical protein 7e-7 At5g25265 unknown protein O.I. H.G. S.X.
0.15 10.3 0.88 Os06g0571100 AK100812.1 - Histone deacetylase superfamily protein 8e-13 At5g26040 HDA2 O.I. H.G. S.X.
0.14 9.3 0.94 Os04g0494400 AK109703.1 - ZmRR2 protein (Response regulator 2) 3e-1 At5g46030 unknown protein O.I. H.G. S.X.
0.14 9.3 0.93 Os11g0565400 AK065292.1 - Zn-finger, RING domain containing protein 6e-3 At3g60300 RWD domain-containing protein O.I. H.G. S.X.
0.12 7.2 0.92 Os04g0108300 BQ907535 - Protein of unknown function DUF177 domaincontaining protein 9e-2 At4g25434 ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10) O.I. H.G. S.X.
0.10 5.7 0.90 Os06g0134300 AK071534.1 - Hypothetical protein 1e-2 At3g50550 unknown protein O.I. H.G. S.X.
0.09 4.9 0.92 Os01g0363500 AK121457.1 - - 3e+0 At4g31360 selenium binding O.I. H.G. S.X.
0.09 4.9 0.92 Os03g0229600 AK072434.1 - Maf-like protein family protein 9e-11 At5g66550 Maf family protein O.I. H.G. S.X.
0.08 4.2 0.90 Os04g0603800 AK063616.1 - Hypothetical protein 2e+0 At5g65030 unknown protein O.I. H.G. S.X.
0.07 3.7 0.89 Os07g0231400 AK105808.1 - Amino acid/polyamine transporter II family protein 7e-4 At3g11900 ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) O.I. H.G. S.X.
0.05 2.5 0.91 Os12g0297400 AK061658.1 - Hypothetical protein 3e-1 At1g35170 - O.I. H.G. S.X.
0.05 2.5 0.90 Os11g0264300 AK064859.1 - Plant regulator RWP-RK domain containing protein 1e-19 At3g59580 RWP-RK domain-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.89	96.9	0.84	Os12g0299300	CA753251	-	-	2e-1	At3g50580	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.92	Os01g0386700	AK067913.1	-	Serine/threonine-protein kinase PBS1 (EC 2.7.1.37)(AvrPphB susceptible protein 1)	2e-1	At2g11005	glycine-rich protein	O.I.	H.G.	S.X.
0.34	40.0	0.93	Os11g0102500	AK068187.1	-	Nuclear receptor binding factor-like protein	5e-5	At3g45770	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.
0.29	31.1	0.93	Os02g0224900	AK101829.1	-	Conserved hypothetical protein	2e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	O.I.	H.G.	S.X.
0.24	22.4	0.93	Os09g0134400	AK069256.1	-	Hypothetical protein	1e-1	At5g41600	BTI3 (VIRB2-INTERACTING PROTEIN 3)	O.I.	H.G.	S.X.
0.23	21.2	0.93	Os03g0687200	AK067324.1	-	Hypothetical protein	2e-1	At1g67035	unknown protein	O.I.	H.G.	S.X.
0.23	21.2	0.93	Os09g0120800	AK066284.1	-	Potential phospholipid-transporting ATPase 2 (EC3.6.3.1) (Aminophospholipid flippase 2)	2e-5	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.
0.21	17.9	0.88	Os03g0789800	AK120138.1	-	Hypothetical protein	7e+0	At5g38080	unknown protein	O.I.	H.G.	S.X.
0.19	15.1	0.93	Os07g0516500	AK061672.1	-	Hypothetical protein	1e-1	At2g43760	molybdopterin biosynthesis MoaE family protein	O.I.	H.G.	S.X.
0.19	15.1	0.91	Os01g0869000	AK067351.1	-	Protein of unknown function DUF639 family protein	1e+0	At5g14690	unknown protein	O.I.	H.G.	S.X.
0.19	15.1	0.93	Os07g0472200	AK061509.1	-	Zn-finger, LSD1 type domain containing protein	3e+0	At4g14830	unknown protein	O.I.	H.G.	S.X.
0.18	13.7	0.89	Os03g0157800	AK067375.1	-	3'-5' exonuclease domain containing protein	1e-25	At5g35910	3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein	O.I.	H.G.	S.X.
0.17	12.6	0.87	Os09g0449600	AK065937.1	-	Aconitase (EC 4.2.1.3)	3e-5	At2g05710	aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative	O.I.	H.G.	S.X.
0.16	11.3	0.94	Os06g0239000	AK071932.1	-	Glucose inhibited division protein family protein	3e-3	At2g23310	ATRER1C1	O.I.	H.G.	S.X.
0.16	11.3	0.90	Os04g0226400	AK120419.1	-	Hypothetical protein	7e-7	At5g25265	unknown protein	O.I.	H.G.	S.X.
0.15	10.3	0.88	Os06g0571100	AK100812.1	-	Histone deacetylase superfamily protein	8e-13	At5g26040	HDA2	O.I.	H.G.	S.X.
0.14	9.3	0.94	Os04g0494400	AK109703.1	-	ZmRR2 protein (Response regulator 2)	3e-1	At5g46030	unknown protein	O.I.	H.G.	S.X.
0.14	9.3	0.93	Os11g0565400	AK065292.1	-	Zn-finger, RING domain containing protein	6e-3	At3g60300	RWD domain-containing protein	O.I.	H.G.	S.X.
0.12	7.2	0.92	Os04g0108300	BQ907535	-	Protein of unknown function DUF177 domaincontaining protein	9e-2	At4g25434	ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10)	O.I.	H.G.	S.X.
0.10	5.7	0.90	Os06g0134300	AK071534.1	-	Hypothetical protein	1e-2	At3g50550	unknown protein	O.I.	H.G.	S.X.
0.09	4.9	0.92	Os01g0363500	AK121457.1	-	-	3e+0	At4g31360	selenium binding	O.I.	H.G.	S.X.
0.09	4.9	0.92	Os03g0229600	AK072434.1	-	Maf-like protein family protein	9e-11	At5g66550	Maf family protein	O.I.	H.G.	S.X.
0.08	4.2	0.90	Os04g0603800	AK063616.1	-	Hypothetical protein	2e+0	At5g65030	unknown protein	O.I.	H.G.	S.X.
0.07	3.7	0.89	Os07g0231400	AK105808.1	-	Amino acid/polyamine transporter II family protein	7e-4	At3g11900	ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1)	O.I.	H.G.	S.X.
0.05	2.5	0.91	Os12g0297400	AK061658.1	-	Hypothetical protein	3e-1	At1g35170	-	O.I.	H.G.	S.X.
0.05	2.5	0.90	Os11g0264300	AK064859.1	-	Plant regulator RWP-RK domain containing protein	1e-19	At3g59580	RWP-RK domain-containing protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.9 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.9 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.9 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
20.9	99.2	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.9	98.6	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7	98.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.9	98.5	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5	98.5	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3	98.3	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2	98.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8	98.3	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.029 1 GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.029	1	GO:0006865	The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os12g0299300
Gene name
Homology with Arabidopsis	Similar to At3g50580: unknown protein (HF=2e-1)
Module size	26 genes
NF	0.15
%ile	13.0

Co-expression analysis

Gene ID Os12g0299300 Gene name Homology with ArabidopsisSimilar to At3g50580: unknown protein (HF=2e-1) Module size 26 genes NF 0.15 %ile 13.0

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0291GO:0006865The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os12g0299300

Gene name
Homology with Arabidopsis Similar to At3g50580: unknown protein (HF=2e-1)

Module size 26 genes

NF 0.15

%ile 13.0

SF Genes GO ID Process Name Link to AmiGO
0.029 1 GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays