CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0290200

Gene name
Homology with Arabidopsis Similar to At5g50210: QS (QUINOLINATE SYNTHASE) (HF=1e-14)

Module size 10 genes

NF 0.37

%ile 43.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.70 88.4 0.94 Os12g0290200 AK112053.1 - - 1e-14 At5g50210 QS (QUINOLINATE SYNTHASE) O.I. H.G. S.X.
0.47 62.3 0.97 Os01g0613900 AK119181.1 - Protein of unknown function UPF0052 and CofDfamily protein 1e-15 At2g34090 MEE18 (maternal effect embryo arrest 18) O.I. H.G. S.X.
0.44 58.1 0.95 Os02g0122900 AK073966.1 - Dimethyladenosine transferase 2e-1 At3g06410 nucleic acid binding / zinc ion binding O.I. H.G. S.X.
0.40 51.1 0.95 Os03g0784000 CA761302 - Flavin-containing amine oxidase family protein 9e+0 At4g28740 - O.I. H.G. S.X.
0.35 41.7 0.95 Os02g0435600 AK122174.1 - Hypothetical protein 2e+0 At5g22260 MS1 (male sterility 1) O.I. H.G. S.X.
0.32 36.3 0.94 Os09g0513800 AK106673.1 - ARIADNE-like protein 7e-30 At1g05890 zinc finger protein-related O.I. H.G. S.X.
0.31 34.5 0.97 Os04g0518200 AK072373.1 - Conserved hypothetical protein 2e+0 At3g59400 GUN4 O.I. H.G. S.X.
0.27 27.5 0.95 Os06g0190000 9634.m00865 - - 6e-2 At1g61280 - O.I. H.G. S.X.
0.20 16.5 0.95 Os01g0944000 CB670412 - Hypothetical protein 4e-1 At4g08290 nodulin MtN21 family protein O.I. H.G. S.X.
0.17 12.6 0.95 Os09g0383400 AK103385.1 - Helicase, C-terminal domain containing protein 9e-5 At1g59990 DEAD/DEAH box helicase, putative (RH22) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.6 97.3 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
4.5 96.3 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
4.2 96.0 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
4.1 96.0 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
3.9 95.8 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
3.9 95.8 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
3.8 95.7 GSM262021 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.7 95.6 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
3.3 95.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.9 94.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.133 1 GO:0006559 The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid.
0.014 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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