CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0281801

Gene name
Homology with Arabidopsis Similar to At2g05510: glycine-rich protein (HF=6e-1)

Module size 6 genes

NF 0.38

%ile 45.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 0.97 Os12g0281801 9634.m00143 - - 6e-1 At2g05510 glycine-rich protein O.I. H.G. S.X.
0.67 87.2 0.98 Os02g0506100 NM_186689.1 - - 7e+0 At5g35610 paired amphipathic helix repeat-containing protein O.I. H.G. S.X.
0.67 87.2 0.98 Os07g0471200 AK111455.1 - Hypothetical protein 2e-4 At2g23310 ATRER1C1 O.I. H.G. S.X.
0.57 77.0 0.98 Os04g0311700 9632.m02304 - - 3e+0 At3g52550 - O.I. H.G. S.X.
0.19 15.1 0.97 Os01g0499500 9630.m00867 - - 2e+0 At1g25425 CLE43 (CLAVATA3/ESR-RELATED 43) O.I. H.G. S.X.
0.16 11.3 0.98 Os08g0493450 9636.m03881 - - 4e-1 At5g49700 DNA-binding protein-related O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.7 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.1 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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