| Gene ID | Os12g0274700 |
| Gene name | |
| Homology with Arabidopsis | Similar to At1g67090: RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) (HF=9e-9) |
| Module size | 15 genes |
| NF | 0.83 |
| %ile | 98.8 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.73 | 91.1 | 0.97 | Os12g0274700 | AF017364.1 | - | Ribulose-1,5-bisphosphate carboxylase/oxygenasesmall subunit (Fragment) | 9e-9 | At1g67090 | RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) | O.I. | H.G. | S.X. | |
| 0.90 | 97.1 | 0.98 | Os07g0544800 | AK069170.1 | - | Oxygen-evolving enhancer protein 3-2, chloroplastprecursor (OEE3) (16 kDa subunit of oxygen evolvingsystem of photosystem II) (OEC 16 kDa subunit)(Ferredoxin-NADP reductase binding protein) (BP) | 1e-4 | At4g21280 | oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ) | O.I. | H.G. | S.X. | |
| 0.90 | 97.1 | 0.98 | Os07g0141400 | AF022732.1 | - | 23 kDa polypeptide of photosystem II | 2e-13 | At1g06680 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) | O.I. | H.G. | S.X. | |
| 0.86 | 96.4 | 0.98 | Os06g0320500 | AF094776.1 | - | Chlorophyll a/b-binding protein | 4e-9 | At3g54890 | LHCA1 | O.I. | H.G. | S.X. | |
| 0.85 | 96.1 | 0.98 | Os03g0778100 | AK060493.1 | - | Photosystem I reaction center subunit III,chloroplast precursor (Light-harvesting complex I 17 kDaprotein) (PSI-F) | 6e-7 | At1g31330 | PSAF (photosystem I subunit F) | O.I. | H.G. | S.X. | |
| 0.82 | 95.0 | 0.98 | Os07g0148900 | AK058788.1 | - | Photosystem I reaction center subunit psaK,chloroplast precursor (Photosystem I subunit X) (PSI-K)(Light-harvesting complex I 7 kDa protein) | 4e-10 | At1g30380 | PSAK (photosystem I subunit K) | O.I. | H.G. | S.X. | |
| 0.81 | 94.8 | 0.97 | Os02g0197600 | AK106085.1 | - | Chlorophyll a/b-binding protein type III(Fragment) | 1e-14 | At1g61520 | LHCA3 | O.I. | H.G. | S.X. | |
| 0.80 | 94.6 | 0.97 | Os04g0414700 | AK058848.1 | - | Conserved hypothetical protein | 3e-5 | At1g08380 | PSAO (photosystem I subunit O) | O.I. | H.G. | S.X. | |
| 0.80 | 94.6 | 0.98 | Os06g0316800 | AK062370.1 | - | Glycine-rich protein (Fragment) | 2e+0 | At5g40490 | RNA recognition motif (RRM)-containing protein | O.I. | H.G. | S.X. | |
| 0.77 | 93.1 | 0.98 | Os08g0119800 | AK060602.1 | - | - | 3e-2 | At2g33510 | protein binding | O.I. | H.G. | S.X. | |
| 0.77 | 93.1 | 0.97 | Os01g0773700 | AK119225.1 | - | Photosystem II reaction center W protein (PSII 6.1kDa protein) (Fragment) | 9e-13 | At5g66005 | Expressed protein | O.I. | H.G. | S.X. | |
| 0.76 | 92.2 | 0.98 | Os08g0435900 | AY445626.1 | - | Lhca4 protein,Type 4 protein of light-harvestingcomplex of photosystem I precursor (Fragment) | 1e-8 | At3g47470 | LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4) | O.I. | H.G. | S.X. | |
| 0.76 | 92.2 | 0.98 | Os07g0435300 | AK120598.1 | - | Photosystem I reaction center subunit IV,chloroplast precursor (PSI- E) (Photosystem I 10.8 kDapolypeptide) | 4e-9 | At2g20260 | PSAE-2 (photosystem I subunit E-2) | O.I. | H.G. | S.X. | |
| 0.76 | 92.2 | 0.97 | Os08g0560900 | AK072473.1 | - | Photosystem I reaction center subunit II,chloroplast precursor (Photosystem I 20 kDa subunit)(PSI-D) | 2e-6 | At4g02770 | PSAD-1 (photosystem I subunit D-1) | O.I. | H.G. | S.X. | |
| 0.73 | 91.1 | 0.97 | Os02g0581100 | 9630.m03544 | - | Conserved hypothetical protein | 1e+0 | At3g06160 | transcriptional factor B3 family protein | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 22.6 | 99.3 | GSM195227 | Anther | GSE7951 | Genome-wide gene expression profiling of rice stigma | |
| 8.7 | 97.8 | GSM377081 | Genomic DNA - 45 day old leaf sample - mutant g7534 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 8.4 | 97.7 | GSM377070 | Genomic DNA - 45 day old leaf sample - mutant d1 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 7.9 | 97.6 | GSM377084 | Genomic DNA - 45 day old leaf sample - mutant f1856 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 7.6 | 97.5 | GSM377077 | Genomic DNA - 45 day old leaf sample - mutant g6489 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 7.4 | 97.5 | GSM377078 | Genomic DNA - 45 day old leaf sample - mutant g6603 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 7.3 | 97.5 | GSM377074 | Genomic DNA - 45 day old leaf sample - mutant g282 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 7.2 | 97.4 | GSM377085 | Genomic DNA - 45 day old leaf sample - mutant f2045 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 7.1 | 97.4 | GSM377075 | Genomic DNA - 45 day old leaf sample - mutant g650 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 6.9 | 97.3 | GSM377071 | Genomic DNA - 45 day old leaf sample - mutant d256 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| SF | Genes | GO ID | Process Name | Link to AmiGO |
|---|---|---|---|---|
| 0.222 | 3 | GO:0009765 | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. |  |
| 0.214 | 3 | GO:0015979 | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. | |
| 0.083 | 1 | GO:0015977 | Any process by which inorganic carbon (usually carbon dioxide) is incorporated into organic compounds (usually carbohydrates). | |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Populus_trichocarpa |
| Triticum_aestivum |
| Vitis_vinifera |
| Zea_mays |
Back to the CoP portal site
Back to the KAGIANA project homepage