CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0260500

Gene name
Homology with Arabidopsis Similar to At5g56860: GNC (GATA, nitrate-inducible, carbon metabolism-involved) (HF=2e+0)

Module size 6 genes

NF 0.21

%ile 19.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 0.75 Os12g0260500 AU184051 - Short-chain dehydrogenase/reductase SDR familyprotein 2e+0 At5g56860 GNC (GATA, nitrate-inducible, carbon metabolism-involved) O.I. H.G. S.X.
0.40 51.1 0.86 Os01g0644900 AK106910.1 - Conserved hypothetical protein 2e+0 At1g02070 unknown protein O.I. H.G. S.X.
0.35 41.7 0.78 Os11g0179700 9639.m00715 - Plant disease resistance response protein familyprotein 2e-2 At1g22900 - O.I. H.G. S.X.
0.26 25.6 0.79 Os12g0135800 AK061124.1 - - 3e-3 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) O.I. H.G. S.X.
0.14 9.3 0.84 Os11g0482200 AK062443.1 - Hypothetical protein 3e-1 At2g34585 unknown protein O.I. H.G. S.X.
0.08 4.2 0.84 Os01g0591300 AK101427.1 - Cytosolic aldehyde dehydrogenase RF2D 4e-6 At3g24503 ALDH2C4 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.0 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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