CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0248300

Gene name
Homology with Arabidopsis Similar to At4g39260: GR-RBP8 (HF=7e-2)

Module size 7 genes

NF 0.43

%ile 53.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.97 Os12g0248300 9640.m01408 - - 7e-2 At4g39260 GR-RBP8 O.I. H.G. S.X.
0.53 71.3 0.98 Os10g0427100 AK120192.1 - Conserved hypothetical protein 3e-1 At2g27740 unknown protein O.I. H.G. S.X.
0.50 68.0 0.98 Os01g0111300 AK105004.2 - Conserved hypothetical protein 2e+0 At5g10450 GRF6 (G-box regulating factor 6) O.I. H.G. S.X.
0.47 62.3 0.98 Os07g0498300 NM_187383.1 - - 3e-14 At4g20150 unknown protein O.I. H.G. S.X.
0.32 36.3 0.98 Os10g0416900 9638.m02375 - - 1e+0 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein O.I. H.G. S.X.
0.29 31.1 0.98 Os04g0483800 9632.m03874 - - 3e+0 At5g12323 unknown protein O.I. H.G. S.X.
0.21 17.9 0.98 Os12g0147000 9640.m00437 - Protein of unknown function DUF296 domaincontaining protein 5e-1 At4g00200 DNA binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
59.7 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
32.5 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.5 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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