Co-expression analysis

Gene ID	Os12g0228400
Gene name
Homology with Arabidopsis	Similar to At3g23990: HSP60 (HEAT SHOCK PROTEIN 60) (HF=3e-2)
Module size	6 genes
NF	0.19
%ile	17.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.8	0.98	Os12g0228400	AK120234.1	-	Chaperonin CPN60-1, mitochondrial precursor(HSP60-1)	3e-2	At3g23990	HSP60 (HEAT SHOCK PROTEIN 60)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	41.7	0.98	Os08g0460400	9636.m03604	-	-	3e-1	At3g24710	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.18	13.7	0.98	Os01g0976100	AK069646.1	-	ABC transporter, transmembrane region domaincontaining protein	4e-77	At3g55320	PGP20 (P-GLYCOPROTEIN 20)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.16	11.3	0.98	Os01g0301700	AK100563.1	-	TPR-like domain containing protein	5e+0	At5g02780	In2-1 protein, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	6.5	0.98	Os11g0158300	AK070475.1	-	Protein prenyltransferase domain containingprotein	1e+0	At5g14850	mannosyltransferase, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	6.5	0.98	Os12g0603901	9640.m04023	-	-	1e-2	At3g15000	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
82.8	100.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
43.5	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
19.1	99.0	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.9	98.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5	97.9	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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